View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9323_low_7 (Length: 374)
Name: NF9323_low_7
Description: NF9323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9323_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 341; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 357
Target Start/End: Original strand, 9250526 - 9250882
Alignment:
| Q |
1 |
ttcataatcttgataacataaaaggaattatgcatatactttgtaaagtgtttacaaaaatttatgaaagcaccaatcactggttcacctctacagagtt |
100 |
Q |
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| T |
9250526 |
ttcataatcttgataacatagaaggaattatgcatatactttgtaaagtgtttacaaaaatttatggaagcaccaatcactggttcacctctacagagtt |
9250625 |
T |
|
| Q |
101 |
tgagaatcattgaaacaatatcatctgtagaattccacactacagaacgccctatactcctcaattgaccaaccaattgaagattggcgtcgttttcgat |
200 |
Q |
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| T |
9250626 |
tgagaatcattgaaacaatatcatctgtagaattccacactacagaacgcactatactcctcaattgaccaaccaattgaagattggcgtcgttttcgat |
9250725 |
T |
|
| Q |
201 |
gccgcattggctgagactctgttgttgctgaagctgttttccattgtagatcaatcgttgatattcaataggaattttggttttggatgaaatttgttgg |
300 |
Q |
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| T |
9250726 |
gccgcattggctgagactctgttgttgctgaagctgttttccattgtagatcaatcgttgatattcaataggaattttggttttggatgaaatttgttgg |
9250825 |
T |
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| Q |
301 |
agaatagattccactgtgtcttctcttgaagcgtgaatgactatggtgttagatttc |
357 |
Q |
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| T |
9250826 |
agaatagattccactgtgtcttctcttgaagcgtgaatgactatggtgttacatttc |
9250882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 26 - 357
Target Start/End: Original strand, 9238033 - 9238364
Alignment:
| Q |
26 |
aattatgcatatactttgtaaagtgtttacaaaaatttatgaaagcaccaatcactggttcacctctacagagtttgagaatcattgaaacaatatcatc |
125 |
Q |
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| T |
9238033 |
aattattcatatactttgcaaagtgattatgaataatcatggaggcaccattcagcgattcgcctctacagaggttgagaatcattgaaacaatatcatc |
9238132 |
T |
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| Q |
126 |
tgtagaattccacactacagaacgccctatactcctcaattgaccaaccaattgaagattggcgtcgttttcgatgccgcattggctgagactctgttgt |
225 |
Q |
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| T |
9238133 |
tgcagaattccacactacagaacgccctatactcctcaattgaccaaccaattgaagattggcgtcgttttcgatgccgcattggctgagactctgttgt |
9238232 |
T |
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| Q |
226 |
tgctgaagctgttttccattgtagatcaatcgttgatattcaataggaattttggttttggatgaaatttgttggagaatagattccactgtgtcttctc |
325 |
Q |
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| T |
9238233 |
tgctgaagctgttttccattgtagatcaatcgttgatattcaataggaattttggttttggatgaaatttgttggagaatagattccactgtgtcttctc |
9238332 |
T |
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| Q |
326 |
ttgaagcgtgaatgactatggtgttagatttc |
357 |
Q |
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| T |
9238333 |
ttgaagcgtgaatgactatggtgttacatttc |
9238364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 68 - 351
Target Start/End: Original strand, 9258667 - 9258950
Alignment:
| Q |
68 |
aagcaccaatcactggttcacctctacagagtttgagaatcattgaaacaatatcatctgtagaattccacactacagaacgccctatactcctcaattg |
167 |
Q |
| |
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||||||||||||| ||||||||||||||| ||||||||| |||||||||| | ||| | ||||||||| || || | ||||||||||||| | |
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| T |
9258667 |
aagcaccaatcaccaattcacctctacagagcctgagaatcaaagaaacaatatattgtgtggctttccacactttaggacacgctatactcctcaagcg |
9258766 |
T |
|
| Q |
168 |
accaaccaattgaagattggcgtcgttttcgatgccgcattggctgagactctgttgttgctgaagctgttttccattgtagatcaatcgttgatattca |
267 |
Q |
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|||||||||||||||||| || ||||||||||||||||||| || ||||||||||| | | |||||||||||| | ||| || |||||||||| || | |
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| T |
9258767 |
accaaccaattgaagatttgcatcgttttcgatgccgcattcgcagagactctgttctagagtaagctgttttccttcgtaaattaatcgttgatgttga |
9258866 |
T |
|
| Q |
268 |
ataggaattttggttttggatgaaatttgttggagaatagattccactgtgtcttctcttgaagcgtgaatgactatggtgtta |
351 |
Q |
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|| |||||| ||||||| || |||||||||| ||||| ||||| ||||| | |||||| ||||| |||| |||| ||||||| |
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| T |
9258867 |
atcggaattctggttttagacgaaatttgttcgagaagcgattcaactgttttttctctagaagcacgaatcactaaggtgtta |
9258950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 152 - 304
Target Start/End: Original strand, 9268747 - 9268899
Alignment:
| Q |
152 |
ctatactcctcaattgaccaaccaattgaagattggcgtcgttttcgatgccgcattggctgagactctgttgttgctgaagctgttttccattgtagat |
251 |
Q |
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|||||||||||||| | ||||||||||| ||||| || |||||||||||||| |||| || ||||||| || | |||||||||||||| | | ||| || |
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| T |
9268747 |
ctatactcctcaatcgtccaaccaattggagatttgcatcgttttcgatgccacattcgcgaagactctattctagctgaagctgttttgcttcgtatat |
9268846 |
T |
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| Q |
252 |
caatcgttgatattcaataggaattttggttttggatgaaatttgttggagaa |
304 |
Q |
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|||||||||| |||||| ||||||||||||||| |||||||||||| ||||| |
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| T |
9268847 |
taatcgttgatgttcaatcggaattttggttttgaatgaaatttgttcgagaa |
9268899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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