View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9323_low_8 (Length: 371)

Name: NF9323_low_8
Description: NF9323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9323_low_8
NF9323_low_8
[»] chr8 (4 HSPs)
chr8 (14-219)||(3068767-3068971)
chr8 (23-219)||(3305797-3305992)
chr8 (23-106)||(3069064-3069147)
chr8 (23-106)||(3305621-3305704)
[»] chr4 (14 HSPs)
chr4 (23-219)||(42305907-42306101)
chr4 (17-219)||(41315895-41316096)
chr4 (23-219)||(15874230-15874425)
chr4 (23-219)||(20878695-20878890)
chr4 (23-219)||(23254555-23254750)
chr4 (23-213)||(38484463-38484653)
chr4 (23-219)||(55893216-55893408)
chr4 (23-106)||(23254379-23254462)
chr4 (23-105)||(42306195-42306277)
chr4 (18-100)||(15874524-15874606)
chr4 (23-97)||(41316198-41316271)
chr4 (23-100)||(55893467-55893544)
chr4 (23-89)||(38485175-38485241)
chr4 (23-73)||(20878980-20879030)
[»] chr2 (6 HSPs)
chr2 (23-219)||(12414015-12414210)
chr2 (23-219)||(12426075-12426270)
chr2 (23-219)||(4731861-4732056)
chr2 (23-106)||(4731717-4731800)
chr2 (23-87)||(12413840-12413904)
chr2 (23-87)||(12425900-12425964)
[»] chr3 (13 HSPs)
chr3 (23-219)||(33794436-33794630)
chr3 (23-219)||(40560637-40560832)
chr3 (23-219)||(14783737-14783932)
chr3 (18-219)||(31724350-31724550)
chr3 (23-219)||(5048006-5048201)
chr3 (23-219)||(20124657-20124853)
chr3 (29-213)||(2439954-2440137)
chr3 (17-106)||(5048294-5048383)
chr3 (23-98)||(2439772-2439847)
chr3 (23-89)||(14784027-14784094)
chr3 (23-87)||(31724657-31724721)
chr3 (23-100)||(40560476-40560552)
chr3 (23-100)||(33794729-33794804)
[»] chr1 (11 HSPs)
chr1 (23-218)||(34492408-34492602)
chr1 (23-212)||(7709887-7710075)
chr1 (23-219)||(52331585-52331780)
chr1 (23-210)||(37646844-37647030)
chr1 (23-106)||(52331409-52331492)
chr1 (23-106)||(7709702-7709785)
chr1 (23-155)||(13618343-13618474)
chr1 (23-98)||(13618582-13618657)
chr1 (23-86)||(34492239-34492302)
chr1 (23-87)||(13618258-13618322)
chr1 (23-88)||(37646744-37646809)
[»] scaffold0428 (2 HSPs)
scaffold0428 (23-219)||(7492-7687)
scaffold0428 (23-106)||(7765-7848)
[»] chr6 (16 HSPs)
chr6 (23-219)||(33746714-33746909)
chr6 (214-330)||(14023324-14023440)
chr6 (23-213)||(16766291-16766480)
chr6 (23-219)||(16368778-16368973)
chr6 (47-219)||(20582786-20582957)
chr6 (23-219)||(6851251-6851444)
chr6 (23-100)||(20582638-20582715)
chr6 (23-189)||(11242294-11242459)
chr6 (23-100)||(16766556-16766633)
chr6 (23-189)||(11246259-11246424)
chr6 (23-97)||(29846978-29847052)
chr6 (23-86)||(33746961-33747024)
chr6 (139-219)||(29846894-29846974)
chr6 (18-87)||(16368638-16368707)
chr6 (23-87)||(29846791-29846855)
chr6 (23-87)||(6851549-6851612)
[»] chr7 (9 HSPs)
chr7 (23-218)||(24825739-24825933)
chr7 (23-219)||(32792961-32793156)
chr7 (23-219)||(11324226-11324421)
chr7 (23-170)||(37873419-37873565)
chr7 (23-170)||(37879077-37879223)
chr7 (23-100)||(24825561-24825638)
chr7 (23-98)||(32792785-32792860)
chr7 (24-88)||(9402563-9402627)
chr7 (24-87)||(11324056-11324119)
[»] chr5 (6 HSPs)
chr5 (23-219)||(31155520-31155715)
chr5 (23-219)||(39761492-39761687)
chr5 (23-219)||(31155895-31156090)
chr5 (23-106)||(39760426-39760509)
chr5 (23-106)||(31156183-31156266)
chr5 (23-81)||(31155372-31155430)
[»] scaffold0291 (2 HSPs)
scaffold0291 (23-219)||(10956-11151)
scaffold0291 (23-219)||(11233-11428)
[»] scaffold0184 (2 HSPs)
scaffold0184 (23-219)||(7136-7326)
scaffold0184 (18-98)||(7015-7095)
[»] scaffold0032 (2 HSPs)
scaffold0032 (60-219)||(32959-33119)
scaffold0032 (24-106)||(33206-33288)
[»] scaffold1408 (1 HSPs)
scaffold1408 (23-98)||(1746-1821)


Alignment Details
Target: chr8 (Bit Score: 133; Significance: 4e-69; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 14 - 219
Target Start/End: Original strand, 3068767 - 3068971
Alignment:
Q  14 gttataagccttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtccttgtaaaataaaaattcagaaatcagttcccgcnnnnnnn 113  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||           
T  3068767 gttaaaaggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc-aaaaaa 3068865  T
Q  114 ntctctcttttaaaaatacccctgtgcccatttaagtcatgataagtcaccaaaatgcctacgtgtcgcacgctgattgaacccattctgtagtttttgg 213  Q
     ||| |||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  3068866 atctgtcttttaaaaatacccctggacccatttaagtcatgacaagtcaccaaaatgcctacgtggcgcacgctgattgaacccattttgtagtttttgg 3068965  T
Q  214 accctg 219  Q
     |||||    
T  3068966 tccctg 3068971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 23 - 219
Target Start/End: Complemental strand, 3305992 - 3305797
Alignment:
Q  23 cttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtccttgtaaaataaaaattcagaaatcagttcccgcnnnnnnnntctctctt 122  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||| |||||        ||| ||||    
T  3305992 cttaaatattgcactcgtccctgcaaatatggcccgtttaagttttcttccttgtaaaataaaaatttagaaatcagtccccgcaaaaaaa-tctgtctt 3305894  T
Q  123 ttaaaaatacccctgtgcccatttaagtcatgataagtcaccaaaatgcctacgtgtcgcacgctgattgaacccattctgtagtttttggaccctg 219  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||    
T  3305893 ttaaaaatacccctgtgcccatttaagtcatgacaagtcaccaaaatgcctacgtggcgcacgctgattgaacccattttgtagtttttggtccctg 3305797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 23 - 106
Target Start/End: Complemental strand, 3069147 - 3069064
Alignment:
Q  23 cttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtccttgtaaaataaaaattcagaaatcagttcccgc 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  3069147 cttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 3069064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 23 - 106
Target Start/End: Original strand, 3305621 - 3305704
Alignment:
Q  23 cttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtccttgtaaaataaaaattcagaaatcagttcccgc 106  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  3305621 cttaaatattgaactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 3305704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 132; Significance: 2e-68; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 23 - 219
Target Start/End: Original strand, 42305907 - 42306101
Alignment:
Q  23 cttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtccttgtaaaataaaaattcagaaatcagttcccgcnnnnnnnntctctctt 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||        ||| ||||    
T  42305907 cttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtcctcgtaaaataaaaattcagaaatcagtccccgcaaaaaaa-tctgtctt 42306005  T
Q  123 ttaaaaatacccctgtgcccatttaagtcatgataagtcaccaaaatgcctacgtgtcgcacgctgattgaacccattctgtagtttttggaccctg 219  Q
    |||||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||    
T  42306006 ttaaaaatacccctgt-cccatttaagtcatgacaagtcaccaaaatgcctacgtggcgcacgctgattgaacccattttgtagtttttggtccctg 42306101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 17 - 219
Target Start/End: Original strand, 41315895 - 41316096
Alignment:
Q  17 ataagccttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtccttgtaaaataaaaattcagaaatcagttcccgcnnnnnnnntc 116  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||        ||    
T  41315895 ataaggcttaaatattgcattcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc-aaaaaaatc 41315993  T
Q  117 tctcttttaaaaatacccctgtgcccatttaagtcatgataagtcaccaaaatgcctacgtgtcgcacgctgattgaacccattctgtagtttttggacc 216  Q
    | ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||  |||||||||||||||| ||| |||||||||||| ||    
T  41315994 tgtcttttaaaaatacccctgggcccatttaagtcatgacaagtcaccaaaatgcctacgtggtgcacgctgattgaaccaattttgtagtttttggtcc 41316093  T
Q  217 ctg 219  Q
    |||    
T  41316094 ctg 41316096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 23 - 219
Target Start/End: Original strand, 15874230 - 15874425
Alignment:
Q  23 cttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtccttgtaaaataaaaattcagaaatcagttcccgcnnnnnnnntctctctt 122  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||        | | ||||    
T  15874230 cttaaatattgcactcgtccctgcaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcaaaaaaatt-tgtctt 15874328  T
Q  123 ttaaaaatacccctgtgcccatttaagtcatgataagtcaccaaaatgcctacgtgtcgcacgctgattgaacccattctgtagtttttggaccctg 219  Q
    ||||||||||||||| || |||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||    
T  15874329 ttaaaaatacccctgggcgcatttaaggcatgacaagtcaccaaaatgcctacgtggcgcacgctgattgaacccattttgtagtttttggtccctg 15874425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 23 - 219
Target Start/End: Original strand, 20878695 - 20878890
Alignment:
Q  23 cttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtccttgtaaaataaaaattcagaaatcagttcccgcnnnnnnnntctctctt 122  Q
    |||||| ||| ||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||        ||| ||||    
T  20878695 cttaaacattccactcatccctgcaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcaaaaaaa-tctatctt 20878793  T
Q  123 ttaaaaatacccctgtgcccatttaagtcatgataagtcaccaaaatgcctacgtgtcgcacgctgattgaacccattctgtagtttttggaccctg 219  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||    
T  20878794 ttaaaaatacccctgggcccatttaagtcatgacaagtcaccaaaatgcctacgtggcgcacgctgattgaacccattttgtagtttttggtccctg 20878890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 23 - 219
Target Start/End: Complemental strand, 23254750 - 23254555
Alignment:
Q  23 cttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtccttgtaaaataaaaattcagaaatcagttcccgcnnnnnnnntctctctt 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||        ||| ||||    
T  23254750 cttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc-aaaaaaatctgtctt 23254652  T
Q  123 ttaaaaatacccctgtgcccatttaagtcatgataagtcaccaaaatgcctacgtgtcgcacgctgattgaacccattctgtagtttttggaccctg 219  Q
    |||||||||| |||| || |||||||||||||| ||||||||||||| |||||||| |||| | | |||||||||||| | |||||||||| |||||    
T  23254651 ttaaaaatactcctgggctcatttaagtcatgacaagtcaccaaaatacctacgtggcgcatgttaattgaacccattttttagtttttggtccctg 23254555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 23 - 213
Target Start/End: Original strand, 38484463 - 38484653
Alignment:
Q  23 cttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtccttgtaaaataaaaattcagaaatcagttcccgcnnnnnnnntctctctt 122  Q
    ||||||||||||||||||| ||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||    ||        ||| ||||    
T  38484463 cttaaatattgcactcgtctctgtaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtctttgcaaaaaaaatctgtctt 38484562  T
Q  123 ttaaaaatacccctgtgcccatttaagtcatgataagtcaccaaaatgcctacgtgtcgcacgctgattgaacccattctgtagtttttgg 213  Q
    ||||||||| ||||| | ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||  ||| ||||||||||||    
T  38484563 ttaaaaatatccctgggtccatttaagtcatgacaagtcaccaaaatgcctacgtggcgcacgctgattgaacatattttgtagtttttgg 38484653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 23 - 219
Target Start/End: Original strand, 55893216 - 55893408
Alignment:
Q  23 cttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtccttgtaaaataaaaattcagaaatcagttcccgcnnnnnnnntctctctt 122  Q
    |||||||||||||| |||| |||||||||||| ||||||||||||| ||  |||||||||||||||||||||||   | |||||        ||| ||||    
T  55893216 cttaaatattgcacccgtctctgcaaatatggcccgtttaagttttggttattgtaaaataaaaattcagaaat---tccccgcaaaaaaa-tctgtctt 55893311  T
Q  123 ttaaaaatacccctgtgcccatttaagtcatgataagtcaccaaaatgcctacgtgtcgcacgctgattgaacccattctgtagtttttggaccctg 219  Q
    ||||||||| ||||| || |||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||| |||||||||||| |||||    
T  55893312 ttaaaaatagccctgggctcatttaagtcatgacaagtcaccaaaatgcctacgtggcgcacgctaattgaacccattttgtagtttttggtccctg 55893408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 23 - 106
Target Start/End: Original strand, 23254379 - 23254462
Alignment:
Q  23 cttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtccttgtaaaataaaaattcagaaatcagttcccgc 106  Q
    |||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  23254379 cttaaatattgcactcgtccctgcaaatatgacccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 23254462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 23 - 105
Target Start/End: Complemental strand, 42306277 - 42306195
Alignment:
Q  23 cttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtccttgtaaaataaaaattcagaaatcagttcccg 105  Q
    ||||||||||| |||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  42306277 cttaaatattgaactcgtccctccaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccg 42306195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 15874606 - 15874524
Alignment:
Q  18 taagccttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtccttgtaaaataaaaattcagaaatcagt 100  Q
    |||| ||||| |||||||||||||||||||||||||  ||||||||||||| ||| |||||||||||||||||||||||||||    
T  15874606 taaggcttaagtattgcactcgtccctgcaaatatgccccgtttaagttttggtctttgtaaaataaaaattcagaaatcagt 15874524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 23 - 97
Target Start/End: Complemental strand, 41316271 - 41316198
Alignment:
Q  23 cttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtccttgtaaaataaaaattcagaaatc 97  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||    
T  41316271 cttaaatattgcactcgtccctgcaaatatggttcgtttaagttttggtccttgtaaaat-aaaattcagaaatc 41316198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 23 - 100
Target Start/End: Complemental strand, 55893544 - 55893467
Alignment:
Q  23 cttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtccttgtaaaataaaaattcagaaatcagt 100  Q
    ||||||||||||||||||||||| ||||||||  |||||||||||| ||||||| |||||||||||||||||||||||    
T  55893544 cttaaatattgcactcgtccctgtaaatatggctcgtttaagttttggtccttgaaaaataaaaattcagaaatcagt 55893467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 23 - 89
Target Start/End: Complemental strand, 38485241 - 38485175
Alignment:
Q  23 cttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtccttgtaaaataaaaatt 89  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||| ||||||| |||||||    
T  38485241 cttaaatattgcactcgtccctgcaaatatgacccgtttaagttttcgtccctgtaaaaaaaaaatt 38485175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 23 - 73
Target Start/End: Complemental strand, 20879030 - 20878980
Alignment:
Q  23 cttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtcc 73  Q
    |||||||||| ||||||||||||||||||||| |||||||||| |||||||    
T  20879030 cttaaatattacactcgtccctgcaaatatggcccgtttaagtcttcgtcc 20878980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 132; Significance: 2e-68; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 23 - 219
Target Start/End: Complemental strand, 12414210 - 12414015
Alignment:
Q  23 cttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtccttgtaaaataaaaattcagaaatcagttcccgcnnnnnnnntctctctt 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||        ||| ||||    
T  12414210 cttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcatccttgtaaaataaaaattcagaaatcagtccccgcaaaaaaa-tctgtctt 12414112  T
Q  123 ttaaaaatacccctgtgcccatttaagtcatgataagtcaccaaaatgcctacgtgtcgcacgctgattgaacccattctgtagtttttggaccctg 219  Q
    |||||||||||||||  |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||    
T  12414111 ttaaaaatacccctggacccatttaagtcatgacaagtcaccaaaatgcctacgtggcgcacgctgattgaacccattttgtagtttttggtccctg 12414015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 23 - 219
Target Start/End: Complemental strand, 12426270 - 12426075
Alignment:
Q  23 cttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtccttgtaaaataaaaattcagaaatcagttcccgcnnnnnnnntctctctt 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||        ||| ||||    
T  12426270 cttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcatccttgtaaaataaaaattcagaaatcagtccccgcaaaaaaa-tctgtctt 12426172  T
Q  123 ttaaaaatacccctgtgcccatttaagtcatgataagtcaccaaaatgcctacgtgtcgcacgctgattgaacccattctgtagtttttggaccctg 219  Q
    |||||||||||||||  |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||    
T  12426171 ttaaaaatacccctggacccatttaagtcatgacaagtcaccaaaatgcctacgtggcgcacgctgattgaacccattttgtagtttttggtccctg 12426075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 23 - 219
Target Start/End: Complemental strand, 4732056 - 4731861
Alignment:
Q  23 cttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtccttgtaaaataaaaattcagaaatcagttcccgcnnnnnnnntctctctt 122  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||        | | ||||    
T  4732056 cttaaatattgcactcatccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcaaaaaaa-tatgtctt 4731958  T
Q  123 ttaaaaatacccctgtgcccatttaagtcatgataagtcaccaaaatgcctacgtgtcgcacgctgattgaacccattctgtagtttttggaccctg 219  Q
    ||||||||| ||||| ||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||| |||||    
T  4731957 ttaaaaatatccctgggcccatttaagtcatgacaagtcaccaaaatgtctacgtggcgcacgctgattgaacccattttgtagtttttggtccctg 4731861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 23 - 106
Target Start/End: Original strand, 4731717 - 4731800
Alignment:
Q  23 cttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtccttgtaaaataaaaattcagaaatcagttcccgc 106  Q
    |||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  4731717 cttaaatattgcactcgtccctgcaaatatggcccgtttaagatttggtccttgtaaaataaaaattcagaaatcagttcccgc 4731800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 12413840 - 12413904
Alignment:
Q  23 cttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtccttgtaaaataaaaa 87  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||||||| | ||||| |||||    
T  12413840 cttaaatattgcacttgtccctgcaaatatggcccgtttaagttttcgtccctctaaaaaaaaaa 12413904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 12425900 - 12425964
Alignment:
Q  23 cttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtccttgtaaaataaaaa 87  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||||||| | ||||| |||||    
T  12425900 cttaaatattgcacttgtccctgcaaatatggcccgtttaagttttcgtccctctaaaaaaaaaa 12425964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 128; Significance: 4e-66; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 23 - 219
Target Start/End: Original strand, 33794436 - 33794630
Alignment:
Q  23 cttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtccttgtaaaataaaaattcagaaatcagttcccgcnnnnnnnntctctctt 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||        ||| ||||    
T  33794436 cttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc--aaaaaatctgtctt 33794533  T
Q  123 ttaaaaatacccctgtgcccatttaagtcatgataagtcaccaaaatgcctacgtgtcgcacgctgattgaacccattctgtagtttttggaccctg 219  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| | |||||||||||||| |||| |||||||||||| |||||    
T  33794534 ttaaaaatacccctgggcccatttaagtcatgacaagtcaccaaaatgcctacgtggcacacgctgattgaactcattttgtagtttttggtccctg 33794630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 23 - 219
Target Start/End: Complemental strand, 40560832 - 40560637
Alignment:
Q  23 cttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtccttgtaaaataaaaattcagaaatcagttcccgcnnnnnnnntctctctt 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||        ||| ||||    
T  40560832 cttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc-aaaaaaatctgtctt 40560734  T
Q  123 ttaaaaatacccctgtgcccatttaagtcatgataagtcaccaaaatgcctacgtgtcgcacgctgattgaacccattctgtagtttttggaccctg 219  Q
    ||||||||||||||| ||||||||||||||||| || |||| ||||| |||||||| | ||||||||||||||||||| |||||||||||| |||||    
T  40560733 ttaaaaatacccctgggcccatttaagtcatgacaaatcactaaaatacctacgtggcacacgctgattgaacccattttgtagtttttggtccctg 40560637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 23 - 219
Target Start/End: Original strand, 14783737 - 14783932
Alignment:
Q  23 cttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtccttgtaaaataaaaattcagaaatcagttcccgcnnnnnnnntctctctt 122  Q
    ||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||        | | || |    
T  14783737 cttaaatattgcacttgtccctgcaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcaaaaaaatt-tgtcgt 14783835  T
Q  123 ttaaaaatacccctgtgcccatttaagtcatgataagtcaccaaaatgcctacgtgtcgcacgctgattgaacccattctgtagtttttggaccctg 219  Q
    |||||||| |||||| ||||||||||||||||| |||||||||||||||||||||| || |||||||||||||||||| |||||||||||| |||||    
T  14783836 ttaaaaatgcccctgggcccatttaagtcatgacaagtcaccaaaatgcctacgtggcgtacgctgattgaacccattttgtagtttttgggccctg 14783932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 18 - 219
Target Start/End: Original strand, 31724350 - 31724550
Alignment:
Q  18 taagccttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtccttgtaaaataaaaattcagaaatcagttcccgcnnnnnnnntct 117  Q
    |||| |||||||||||||||||||| ||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||| |||||        | |    
T  31724350 taaggcttaaatattgcactcgtccatgcaaatatggcccgtttaaattttggtccttgtaaaataaaaattcagaaatcagtccccgcaaaaaaatt-t 31724448  T
Q  118 ctcttttaaaaatacccctgtgcccatttaagtcatgataagtcaccaaaatgcctacgtgtcgcacgctgattgaacccattctgtagtttttggaccc 217  Q
     |||||||||||||||| ||  |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| | |||||||||||| |||    
T  31724449 gtcttttaaaaatacccttggacccatttaagtcatgacaagtcaccaaaatgcctacgtggcgcacgctgattgaacccactttgtagtttttggtccc 31724548  T
Q  218 tg 219  Q
    ||    
T  31724549 tg 31724550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 23 - 219
Target Start/End: Original strand, 5048006 - 5048201
Alignment:
Q  23 cttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtccttgtaaaataaaaattcagaaatcagttcccgcnnnnnnnntctctctt 122  Q
    |||||||||||||||||||| || |||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||        ||| ||||    
T  5048006 cttaaatattgcactcgtccttgtaaatatggtccgtttaagttttggttcttgtaaaataaaaattcagaaatcagtccccgcgaaaaaa-tctatctt 5048104  T
Q  123 ttaaaaatacccctgtgcccatttaagtcatgataagtcaccaaaatgcctacgtgtcgcacgctgattgaacccattctgtagtttttggaccctg 219  Q
    ||||||||||||||| | |||||||||| |||| |||||||||||||||||||||| | |||||||||||||| |||| |||||||||||| |||||    
T  5048105 ttaaaaatacccctgggtccatttaagtaatgacaagtcaccaaaatgcctacgtggcacacgctgattgaactcattttgtagtttttggtccctg 5048201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 23 - 219
Target Start/End: Original strand, 20124657 - 20124853
Alignment:
Q  23 cttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtccttgtaaaataaaaattcagaaatcagttcccgcnnnnnnnntctctctt 122  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||        | | ||||    
T  20124657 cttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtctttgtaaaataaaaattcagaaatcagtccccgc-aaaaaaatatgtctt 20124755  T
Q  123 ttaaaaatacccct-gtgcccatttaagtcatgataagtcaccaaaatgcctacgtgtcgcacgctgattgaacccattctgtagtttttggaccctg 219  Q
    |||||||||||||| | |||||||||||| |||| |||||||||||||||||||||  |||||||||||||||| |||| |||| ||||||| |||||    
T  20124756 ttaaaaatacccctggggcccatttaagtaatgacaagtcaccaaaatgcctacgtagcgcacgctgattgaactcattttgtaatttttggtccctg 20124853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 29 - 213
Target Start/End: Complemental strand, 2440137 - 2439954
Alignment:
Q  29 tattgcactcgtccctgcaaatatggtccgtttaagttttcgtccttgtaaaataaaaattcagaaatcagttcccgcnnnnnnnntctctcttttaaaa 128  Q
    |||||||||||||| || |||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||        ||| ||||||||||    
T  2440137 tattgcactcgtccttgtaaatatggtccgtttaagttttggttcttgtaaaataaaaattcagaaatcagtccccgcaaaaaaa-tctgtcttttaaaa 2440039  T
Q  129 atacccctgtgcccatttaagtcatgataagtcaccaaaatgcctacgtgtcgcacgctgattgaacccattctgtagtttttgg 213  Q
    ||||||||| | |||||||||| |||| ||||||||||||||||||| || |||||||||||||||| |||| ||||||||||||    
T  2440038 atacccctgggtccatttaagtaatgacaagtcaccaaaatgcctacatggcgcacgctgattgaactcattttgtagtttttgg 2439954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 17 - 106
Target Start/End: Complemental strand, 5048383 - 5048294
Alignment:
Q  17 ataagccttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtccttgtaaaataaaaattcagaaatcagttcccgc 106  Q
    ||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||| |||||    
T  5048383 ataaggcttaaatattgcactcgtccctgcaaatatggcccgtttaagttttggtcctcgtaaaataaaaattcagaaatcagtccccgc 5048294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 23 - 98
Target Start/End: Original strand, 2439772 - 2439847
Alignment:
Q  23 cttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtccttgtaaaataaaaattcagaaatca 98  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||    
T  2439772 cttaaatattgcactcgtccctgcaaatatggcccgtttaagttttggtcctcgtaaaataaaaattcagaaatca 2439847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 89
Target Start/End: Complemental strand, 14784094 - 14784027
Alignment:
Q  23 cttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtccttgt-aaaataaaaatt 89  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||| ||| ||||||||||||    
T  14784094 cttaaatattgcactcgtccctgcaaatatgacccgtttaagttttcgtccctgtaaaaataaaaatt 14784027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 31724721 - 31724657
Alignment:
Q  23 cttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtccttgtaaaataaaaa 87  Q
    |||||||||||||||||||| ||||||||||| ||||||||||||| ||||  ||||| ||||||    
T  31724721 cttaaatattgcactcgtccttgcaaatatggcccgtttaagtttttgtcccggtaaattaaaaa 31724657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 100
Target Start/End: Original strand, 40560476 - 40560552
Alignment:
Q  23 cttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtccttgtaaaataaaaattcagaaatcagt 100  Q
    |||||||||||||| ||||||||||||||||   ||||| | |||| |||| ||||||| ||||||||||||||||||    
T  40560476 cttaaatattgcacccgtccctgcaaatatgcctcgttttaattttagtccctgtaaaa-aaaaattcagaaatcagt 40560552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 100
Target Start/End: Complemental strand, 33794804 - 33794729
Alignment:
Q  23 cttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtccttgtaaaataaaaattcagaaatcagt 100  Q
    |||||||||||||||||||||||||||||||   ||||| | |||| |||| ||||||  ||||| ||||||||||||    
T  33794804 cttaaatattgcactcgtccctgcaaatatgcctcgttttaattttagtccctgtaaa--aaaaaatcagaaatcagt 33794729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 127; Significance: 2e-65; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 23 - 218
Target Start/End: Complemental strand, 34492602 - 34492408
Alignment:
Q  23 cttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtccttgtaaaataaaaattcagaaatcagttcccgcnnnnnnnntctctctt 122  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||        ||| ||||    
T  34492602 cttaaatattgcactcgttcctgcaaatatggtctgtttaagttttggtccttgtaaaataaaaattcagacatcagttcccgcaaaaaaa-tctatctt 34492504  T
Q  123 ttaaaaatacccctgtgcccatttaagtcatgataagtcaccaaaatgcctacgtgtcgcacgctgattgaacccattctgtagtttttggaccct 218  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||    
T  34492503 ttaaaaatacccctgggcccatttaagtcatgacaagtcaccaaaatgcctacgtggcgcacgctgattgaacccattttgtagtttttggtccct 34492408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 23 - 212
Target Start/End: Complemental strand, 7710075 - 7709887
Alignment:
Q  23 cttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtccttgtaaaataaaaattcagaaatcagttcccgcnnnnnnnntctctctt 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  ||        ||| ||||    
T  7710075 cttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtccttgtaaaataaaaattcagaaatcagtccttgc-aaaaaaatctgtctt 7709977  T
Q  123 ttaaaaatacccctgtgcccatttaagtcatgataagtcaccaaaatgcctacgtgtcgcacgctgattgaacccattctgtagtttttg 212  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||| ||||||||||||||| |||||||||||    
T  7709976 ttaaaaatacccctgtgcccatttaagtcatgacaagtcaccaaaatgcctacgtggcacacactgattgaacccattttgtagtttttg 7709887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 23 - 219
Target Start/End: Complemental strand, 52331780 - 52331585
Alignment:
Q  23 cttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtccttgtaaaataaaaattcagaaatcagttcccgcnnnnnnnntctctctt 122  Q
    |||||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||| |||||||||| |||||        | | ||||    
T  52331780 cttaaatattgcactcgtccctgcaaatatggcccgtttaagttttgatccttgtaaaataaaaatttagaaatcagtccccgcaaaaaaatt-tatctt 52331682  T
Q  123 ttaaaaatacccctgtgcccatttaagtcatgataagtcaccaaaatgcctacgtgtcgcacgctgattgaacccattctgtagtttttggaccctg 219  Q
    ||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||    
T  52331681 ttaaaaatacccctgggcccatttaagtcatgacaagtcatcaaaatgcctacgtggcgcacgctgattgaacccattttgtagtttttggtccctg 52331585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 23 - 210
Target Start/End: Complemental strand, 37647030 - 37646844
Alignment:
Q  23 cttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtccttgtaaaataaaaattcagaaatcagttcccgcnnnnnnnntctctctt 122  Q
    ||||||||||||| ||||  ||||||||||||  |||||||||||| |||||||||||||||||||||| |||||||| |  ||        ||| ||||    
T  37647030 cttaaatattgcattcgtttctgcaaatatggctcgtttaagttttggtccttgtaaaataaaaattcaaaaatcagtccgtgcaaaaaaa-tctgtctt 37646932  T
Q  123 ttaaaaatacccctgtgcccatttaagtcatgataagtcaccaaaatgcctacgtgtcgcacgctgattgaacccattctgtagtttt 210  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |||| |||||||||    
T  37646931 ttaaaaatacccctgggcccatttaagtcatgacaagtcaccaaaatgcctacgtggcgcacgctgattgaactcattttgtagtttt 37646844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 23 - 106
Target Start/End: Original strand, 52331409 - 52331492
Alignment:
Q  23 cttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtccttgtaaaataaaaattcagaaatcagttcccgc 106  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  52331409 cttaaatattgcactcgtccctgcaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 52331492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 23 - 106
Target Start/End: Original strand, 7709702 - 7709785
Alignment:
Q  23 cttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtccttgtaaaataaaaattcagaaatcagttcccgc 106  Q
    ||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  7709702 cttaaatattgaactcgtccctgcaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 7709785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 23 - 155
Target Start/End: Complemental strand, 13618474 - 13618343
Alignment:
Q  23 cttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtccttgtaaaataaaaattcagaaatcagttcccgcnnnnnnnntctctctt 122  Q
    ||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||| | || ||        ||| ||||    
T  13618474 cttaaatattgcattcgtccctgcaaatatggcccgtttaagttttggtccttgtaaaataaaaaatcagaaatcaatcccagc-aaaaaaatctgtctt 13618376  T
Q  123 ttaaaaatacccctgtgcccatttaagtcatga 155  Q
    ||||||||||||||| |||||||||||||||||    
T  13618375 ttaaaaatacccctgggcccatttaagtcatga 13618343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 23 - 98
Target Start/End: Complemental strand, 13618657 - 13618582
Alignment:
Q  23 cttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtccttgtaaaataaaaattcagaaatca 98  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  13618657 cttaaatattgcattcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaaatcagaaatca 13618582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 23 - 86
Target Start/End: Original strand, 34492239 - 34492302
Alignment:
Q  23 cttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtccttgtaaaataaaa 86  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||    
T  34492239 cttaaatattgcactcgtccctgcaaatatggcccgtttaagttttcgtccgtgtaaaaaaaaa 34492302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 13618258 - 13618322
Alignment:
Q  23 cttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtccttgtaaaataaaaa 87  Q
    |||||||||||||||| ||||||||||||||  ||||||||||||| |||| ||||||| |||||    
T  13618258 cttaaatattgcactcttccctgcaaatatgacccgtttaagttttagtccctgtaaaaaaaaaa 13618322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 37646744 - 37646809
Alignment:
Q  23 cttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtccttgtaaaataaaaat 88  Q
    ||||||||||||| ||||||||||||||||| | |||||   |||| |||| ||||||| ||||||    
T  37646744 cttaaatattgcattcgtccctgcaaatatgcttcgttttgattttagtccctgtaaaaaaaaaat 37646809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 23 - 219
Target Start/End: Original strand, 7492 - 7687
Alignment:
Q  23 cttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtccttgtaaaataaaaattcagaaatcagttcccgcnnnnnnnntctctctt 122  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||| | |||||        ||| ||||    
T  7492 cttaaatattgcactcgtccctgcaaatatggcccgtttaagttttggtccttctaaaataaaaattcagaaatcaatccccgcaaaaaaa-tctgtctt 7590  T
Q  123 ttaaaaatacccctgtgcccatttaagtcatgataagtcaccaaaatgcctacgtgtcgcacgctgattgaacccattctgtagtttttggaccctg 219  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||    
T  7591 ttaaaaatacccctgggcccatttaagtcatgacaagtcaccaaaatgcctacgtggcgcacgctgattgaacccattttgtagtttttggtccctg 7687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 23 - 106
Target Start/End: Complemental strand, 7848 - 7765
Alignment:
Q  23 cttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtccttgtaaaataaaaattcagaaatcagttcccgc 106  Q
    ||||||||||||||||||||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  7848 cttaaatattgcactcgtccctgcaaatatggcacgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 7765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 124; Significance: 1e-63; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 23 - 219
Target Start/End: Original strand, 33746714 - 33746909
Alignment:
Q  23 cttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtccttgtaaaataaaaattcagaaatcagttcccgcnnnnnnnntctctctt 122  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| | || ||        ||| ||||    
T  33746714 cttaaatattgcactcgtccctgcaaatatggcccgtttaagttttcgtccatgtaaaataaaaattcagaaatcaatccctgcaaaaaaa-tctgtctt 33746812  T
Q  123 ttaaaaatacccctgtgcccatttaagtcatgataagtcaccaaaatgcctacgtgtcgcacgctgattgaacccattctgtagtttttggaccctg 219  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||    
T  33746813 ttaaaaatacccctgggcccatttaagtcatgacaagtcaccaaaatgcctacgtggcgcacgctgattgaacccattttgtagtttttggtccctg 33746909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 214 - 330
Target Start/End: Complemental strand, 14023440 - 14023324
Alignment:
Q  214 accctgacatttcgatcatggctcatgttgcaacattagtacatcggaagaaaatacaaggtcgaaatgtgatttctccgatcaaatttggacgaacaaa 313  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14023440 accctgacatttcgatcatggctcatgtttcaacattagtacatcggacgaaaatacaaggtcgaaatgtgatttctccgatcaaatttggacgaacaaa 14023341  T
Q  314 gttgtttgactatgata 330  Q
    |||||||||||||||||    
T  14023340 gttgtttgactatgata 14023324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 23 - 213
Target Start/End: Original strand, 16766291 - 16766480
Alignment:
Q  23 cttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtccttgtaaaataaaaattcagaaatcagttcccgcnnnnnnnntctctctt 122  Q
    |||||||||||||||||||||||||||||||  || |||||||||| ||| ||||||||||||||||||||||||||| |||||        ||| ||||    
T  16766291 cttaaatattgcactcgtccctgcaaatatgacccatttaagttttggtctttgtaaaataaaaattcagaaatcagtccccgcaaaaaaa-tctgtctt 16766389  T
Q  123 ttaaaaatacccctgtgcccatttaagtcatgataagtcaccaaaatgcctacgtgtcgcacgctgattgaacccattctgtagtttttgg 213  Q
    |||||||||||| || ||||||||||||||||  |||||||||||||||||||||| ||||||||||||||||| ||| || |||||||||    
T  16766390 ttaaaaatacccttgggcccatttaagtcatggcaagtcaccaaaatgcctacgtggcgcacgctgattgaacctattttgcagtttttgg 16766480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 23 - 219
Target Start/End: Complemental strand, 16368973 - 16368778
Alignment:
Q  23 cttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtccttgtaaaataaaaattcagaaatcagttcccgcnnnnnnnntctctctt 122  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| |||| |||||||| ||||||||||||||||| ||  |        | | ||||    
T  16368973 cttaaatattgcactcgtccctgcaaatatgatccgtttaagttttggtccgtgtaaaatgaaaattcagaaatcagtccctacaaaaaaatt-tgtctt 16368875  T
Q  123 ttaaaaatacccctgtgcccatttaagtcatgataagtcaccaaaatgcctacgtgtcgcacgctgattgaacccattctgtagtttttggaccctg 219  Q
    ||||||||||||||| |||||||||| |||||| |||||||||||||||||||||| |||||||| |||||||||||| | |||||||||| |||||    
T  16368874 ttaaaaatacccctgggcccatttaaatcatgacaagtcaccaaaatgcctacgtggcgcacgctaattgaacccattttttagtttttggtccctg 16368778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 47 - 219
Target Start/End: Complemental strand, 20582957 - 20582786
Alignment:
Q  47 aaatatggtccgtttaagttttcgtccttgtaaaataaaaattcagaaatcagttcccgcnnnnnnnntctctcttttaaaaatacccctgtgcccattt 146  Q
    |||||||| ||||||||||||| |||||||||||||||||||| |||||||||  |||||        ||| ||||||||||||| ||||| ||||||||    
T  20582957 aaatatggcccgtttaagttttggtccttgtaaaataaaaatttagaaatcagaccccgcaaaaaaa-tctgtcttttaaaaatatccctgggcccattt 20582859  T
Q  147 aagtcatgataagtcaccaaaatgcctacgtgtcgcacgctgattgaacccattctgtagtttttggaccctg 219  Q
    ||||||||| |||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||    
T  20582858 aagtcatgacaagtcatcaaaatgcctacgtggcgcacgctgattgaacccattttgtagtttttggtccctg 20582786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 23 - 219
Target Start/End: Original strand, 6851251 - 6851444
Alignment:
Q  23 cttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtccttgtaaaataaaaattcagaaatcagttcccgcnnnnnnnntctctctt 122  Q
    |||||||||||||||||||| |||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||| |         || ||||    
T  6851251 cttaaatattgcactcgtccatgcaaatatgatccgtttaagttttggtctttgtaaaataaaaattcagaaatcagttcccacaaaaaaaa-ctgtctt 6851349  T
Q  123 ttaaaaatacccctgtgcccatttaagtcatgataagtcaccaaaatgcctacgtgtcgcacgctgattgaacccattctgtagtttttggaccctg 219  Q
    |||||||||||||||   ||||||||||||||| ||||||||||||||| ||||||  | || ||  ||||||||||| |||||| ||||| |||||    
T  6851350 ttaaaaatacccctggatccatttaagtcatgacaagtcaccaaaatgcttacgtggtgtacact--ttgaacccattttgtagtatttggtccctg 6851444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 23 - 100
Target Start/End: Original strand, 20582638 - 20582715
Alignment:
Q  23 cttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtccttgtaaaataaaaattcagaaatcagt 100  Q
    |||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||    
T  20582638 cttaaatattgcactcgtccctacaaatatagtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagt 20582715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 23 - 189
Target Start/End: Original strand, 11242294 - 11242459
Alignment:
Q  23 cttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtccttgtaaaataaaaattcagaaatcagttcccgcnnnnnnnntctctctt 122  Q
    |||||||||||||||||||||   ||||||||  | ||||||||||  |||||||||||||||||||||||||||||| |||||        ||| ||||    
T  11242294 cttaaatattgcactcgtccccataaatatggctcatttaagttttgatccttgtaaaataaaaattcagaaatcagtccccgc-aaaaaaatctgtctt 11242392  T
Q  123 ttaaaaatacccctgtgcccatttaagtcatgataagtcaccaaaatgcctacgtgtcgcacgctga 189  Q
    |||||||||| | ||  |||||||||||||||| | || ||||||||||||||||| || |||||||    
T  11242393 ttaaaaatactcatggacccatttaagtcatgacaggtgaccaaaatgcctacgtggcgtacgctga 11242459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 23 - 100
Target Start/End: Complemental strand, 16766633 - 16766556
Alignment:
Q  23 cttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtccttgtaaaataaaaattcagaaatcagt 100  Q
    ||||||||||||| |||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||    
T  16766633 cttaaatattgcaatcgtccctgcaaatatggcccgtttatgttttggtccttgtaaaataaaaattcagaaatcagt 16766556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 23 - 189
Target Start/End: Complemental strand, 11246424 - 11246259
Alignment:
Q  23 cttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtccttgtaaaataaaaattcagaaatcagttcccgcnnnnnnnntctctctt 122  Q
    |||||||||||||||| |||||||||||||| || ||||||||||  |||||||||||||||||||||| |||||||| ||| |        | | ||||    
T  11246424 cttaaatattgcactcatccctgcaaatatgatctgtttaagtttgagtccttgtaaaataaaaattcacaaatcagtccccacaaaaaaatt-tgtctt 11246326  T
Q  123 ttaaaaatacccctgtgcccatttaagtcatgataagtcaccaaaatgcctacgtgtcgcacgctga 189  Q
    ||| ||||||||||    | ||||||||||||| | || ||||||||||||||||| ||||||||||    
T  11246325 ttataaatacccctagatctatttaagtcatgaaaggttaccaaaatgcctacgtgacgcacgctga 11246259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 23 - 97
Target Start/End: Complemental strand, 29847052 - 29846978
Alignment:
Q  23 cttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtccttgtaaaataaaaattcagaaatc 97  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| |||  |||||||||||||||||||||||    
T  29847052 cttaaatattgcactcgtccctgcaaatatggcccgtttaagttttggtctctgtaaaataaaaattcagaaatc 29846978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 23 - 86
Target Start/End: Complemental strand, 33747024 - 33746961
Alignment:
Q  23 cttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtccttgtaaaataaaa 86  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  33747024 cttaaatattgcacccgtccctgcaaatatggcccgtttaagttttcgtccttgtaaaaaaaaa 33746961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 139 - 219
Target Start/End: Complemental strand, 29846974 - 29846894
Alignment:
Q  139 gcccatttaagtcatgataagtcaccaaaatgcctacgtgtcgcacgctgattgaacccattctgtagtttttggaccctg 219  Q
    ||||||||||||||||| ||||||||||| |||||||||| |||| |||||||||||||||| |||  ||||||| |||||    
T  29846974 gcccatttaagtcatgacaagtcaccaaattgcctacgtggcgcaagctgattgaacccattttgtgttttttggtccctg 29846894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 16368638 - 16368707
Alignment:
Q  18 taagccttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtccttgtaaaataaaaa 87  Q
    |||| ||||||||||||||||||||||||||||||||   |||||||||||||||| ||||||| |||||    
T  16368638 taaggcttaaatattgcactcgtccctgcaaatatggcatgtttaagttttcgtccctgtaaaaaaaaaa 16368707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 29846791 - 29846855
Alignment:
Q  23 cttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtccttgtaaaataaaaa 87  Q
    ||||||||||||||||||||||||||||||||  | ||||||||||||||| ||||||| |||||    
T  29846791 cttaaatattgcactcgtccctgcaaatatgggtcatttaagttttcgtccctgtaaaaaaaaaa 29846855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 6851612 - 6851549
Alignment:
Q  23 cttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtccttgtaaaataaaaa 87  Q
    |||||||||||||| |||| ||||||||||||  ||||||||||||||| | ||||||| |||||    
T  6851612 cttaaatattgcac-cgtctctgcaaatatggctcgtttaagttttcgttcctgtaaaaaaaaaa 6851549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 123; Significance: 4e-63; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 23 - 218
Target Start/End: Complemental strand, 24825933 - 24825739
Alignment:
Q  23 cttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtccttgtaaaataaaaattcagaaatcagttcccgcnnnnnnnntctctctt 122  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||| |||||        ||| ||||    
T  24825933 cttaaatattgcactcgtccctgcaaatatggcccgtttaagttttggtccttgaaaaataaaaattcagaaatcagtccccgcaaaaaaa-tctgtctt 24825835  T
Q  123 ttaaaaatacccctgtgcccatttaagtcatgataagtcaccaaaatgcctacgtgtcgcacgctgattgaacccattctgtagtttttggaccct 218  Q
    ||||||||||||||| ||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||    
T  24825834 ttaaaaatacccctgggcccatttaagtcataacaagtcaccaaaatgcctacgtggcgcacgctgattgaacccattttgtagtttttggtccct 24825739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 23 - 219
Target Start/End: Complemental strand, 32793156 - 32792961
Alignment:
Q  23 cttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtccttgtaaaataaaaattcagaaatcagttcccgcnnnnnnnntctctctt 122  Q
    |||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||| || ||        ||| ||||    
T  32793156 cttaaatattgcactcgtccctgcaaatatagcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccctgcaaaaaaa-tctgtctt 32793058  T
Q  123 ttaaaaatacccctgtgcccatttaagtcatgataagtcaccaaaatgcctacgtgtcgcacgctgattgaacccattctgtagtttttggaccctg 219  Q
    |||||||||||||||  |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| | |||||||||||| |||||    
T  32793057 ttaaaaatacccctggacccatttaagtcatgacaagtcaccaaaatgcctacgtggcgcacgctgattgaacccactttgtagtttttggtccctg 32792961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 23 - 219
Target Start/End: Complemental strand, 11324421 - 11324226
Alignment:
Q  23 cttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtccttgtaaaataaaaattcagaaatcagttcccgcnnnnnnnntctctctt 122  Q
    ||||||||||||| ||||||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||| |  ||||        ||| ||||    
T  11324421 cttaaatattgcattcgtccctgcaaatatggctcgtttaagttttggtccttgtaaaataaaaattcagaaatcaatctccgcaaaaaaa-tctgtctt 11324323  T
Q  123 ttaaaaatacccctgtgcccatttaagtcatgataagtcaccaaaatgcctacgtgtcgcacgctgattgaacccattctgtagtttttggaccctg 219  Q
    |||||||||||||||  |||||||||||||||| ||||||||||||||||||| || |||||||||||||||| |||| |||||||||||| |||||    
T  11324322 ttaaaaatacccctggacccatttaagtcatgacaagtcaccaaaatgcctacatggcgcacgctgattgaacgcattttgtagtttttggtccctg 11324226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 23 - 170
Target Start/End: Original strand, 37873419 - 37873565
Alignment:
Q  23 cttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtccttgtaaaataaaaattcagaaatcagttcccgcnnnnnnnntctctctt 122  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| || ||        ||| ||||    
T  37873419 cttaaatattgcactcgtccctgcaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccctgc-aaaaaattctgtctt 37873517  T
Q  123 ttaaaaatacccctgtgcccatttaagtcatgataagtcaccaaaatg 170  Q
    ||||||||||||||| |||||||||| | |||| | ||||||||||||    
T  37873518 ttaaaaatacccctgggcccatttaattgatgacaggtcaccaaaatg 37873565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 23 - 170
Target Start/End: Complemental strand, 37879223 - 37879077
Alignment:
Q  23 cttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtccttgtaaaataaaaattcagaaatcagttcccgcnnnnnnnntctctctt 122  Q
    ||||||||||| |||||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||||| | || ||        ||| ||||    
T  37879223 cttaaatattgtactcgtccctgcaaatatgacccgtttaagttttggtccttgtaaaataaaaattcagaaatcaatccctgc-aaaaaattctgtctt 37879125  T
Q  123 ttaaaaatacccctgtgcccatttaagtcatgataagtcaccaaaatg 170  Q
    ||||||||||||||| |||||||||| | |||| | ||||||||||||    
T  37879124 ttaaaaatacccctgggcccatttaattgatgacaggtcaccaaaatg 37879077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 23 - 100
Target Start/End: Original strand, 24825561 - 24825638
Alignment:
Q  23 cttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtccttgtaaaataaaaattcagaaatcagt 100  Q
    ||||||||||||||||||||||||||||||||  |||||||||||| |||||||||||||||||||||||||||||||    
T  24825561 cttaaatattgcactcgtccctgcaaatatggctcgtttaagttttggtccttgtaaaataaaaattcagaaatcagt 24825638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 23 - 98
Target Start/End: Original strand, 32792785 - 32792860
Alignment:
Q  23 cttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtccttgtaaaataaaaattcagaaatca 98  Q
    |||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  32792785 cttaaatattgcactcgtccttgcaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatca 32792860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 9402563 - 9402627
Alignment:
Q  24 ttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtccttgtaaaataaaaat 88  Q
    ||||||||||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||    
T  9402563 ttaaatattgcactcgtccctgcaaatatgacccgtttaagttttggtccttgtaaaataaaaat 9402627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 24 - 87
Target Start/End: Original strand, 11324056 - 11324119
Alignment:
Q  24 ttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtccttgtaaaataaaaa 87  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||| |||||    
T  11324056 ttaaatattgcactcgtccctgcaaatatggcccgattaagttttcgtccctgtaaaaaaaaaa 11324119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 116; Significance: 6e-59; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 23 - 219
Target Start/End: Complemental strand, 31155715 - 31155520
Alignment:
Q  23 cttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtccttgtaaaataaaaattcagaaatcagttcccgcnnnnnnnntctctctt 122  Q
    |||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||||||| |||||        | | ||||    
T  31155715 cttaaatattgcactcgtccctgcaaatatgacccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcaaaaaaa-tatgtctt 31155617  T
Q  123 ttaaaaatacccctgtgcccatttaagtcatgataagtcaccaaaatgcctacgtgtcgcacgctgattgaacccattctgtagtttttggaccctg 219  Q
    |||||||||||| || ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||| |||||    
T  31155616 ttaaaaatacccttgggcccatttaagtcatgacaagtcaccaaaatgcctacgtgacgcacgctgattgaatccattttgtagtttttggtccctg 31155520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 23 - 219
Target Start/End: Complemental strand, 39761687 - 39761492
Alignment:
Q  23 cttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtccttgtaaaataaaaattcagaaatcagttcccgcnnnnnnnntctctctt 122  Q
    ||||||||||||||| ||||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||||| || ||        ||| ||||    
T  39761687 cttaaatattgcacttgtccctgcaaatatggcacgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccctgcaaaaaaa-tctatctt 39761589  T
Q  123 ttaaaaatacccctgtgcccatttaagtcatgataagtcaccaaaatgcctacgtgtcgcacgctgattgaacccattctgtagtttttggaccctg 219  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||| | ||||||||||||||||||| |||||||||||| |||||    
T  39761588 ttaaaaatacccctgggcccatttaagtcatgacaagtcaccaaaatgcttacgtggcacacgctgattgaacccattttgtagtttttggtccctg 39761492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 23 - 219
Target Start/End: Original strand, 31155895 - 31156090
Alignment:
Q  23 cttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtccttgtaaaataaaaattcagaaatcagttcccgcnnnnnnnntctctctt 122  Q
    |||||||||||  ||||||||||||||||||   |||||||||||| ||||||||||||||||||||||||||||||| | |||        | | ||||    
T  31155895 cttaaatattgatctcgtccctgcaaatatgacacgtttaagttttggtccttgtaaaataaaaattcagaaatcagtcctcgcaaaaaaa-tatgtctt 31155993  T
Q  123 ttaaaaatacccctgtgcccatttaagtcatgataagtcaccaaaatgcctacgtgtcgcacgctgattgaacccattctgtagtttttggaccctg 219  Q
    ||||||||||||||| |||||||||||| |||| ||||||||||||||| |||||| |||||||||||||||| |||| ||||| |||||| |||||    
T  31155994 ttaaaaatacccctgggcccatttaagttatgacaagtcaccaaaatgcttacgtggcgcacgctgattgaactcattttgtagattttggtccctg 31156090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 23 - 106
Target Start/End: Original strand, 39760426 - 39760509
Alignment:
Q  23 cttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtccttgtaaaataaaaattcagaaatcagttcccgc 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||    
T  39760426 cttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaattagtccccgc 39760509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 23 - 106
Target Start/End: Complemental strand, 31156266 - 31156183
Alignment:
Q  23 cttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtccttgtaaaataaaaattcagaaatcagttcccgc 106  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||    
T  31156266 cttaaatattgcattcgtccctacaaatatggtccgtttaagttttggttcttgtaaaataaaaattcagaaatcagtccccgc 31156183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 23 - 81
Target Start/End: Original strand, 31155372 - 31155430
Alignment:
Q  23 cttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtccttgtaaaa 81  Q
    ||||||||||| |||||||| ||||||||||| |||||||| |||| ||||||||||||    
T  31155372 cttaaatattgtactcgtccatgcaaatatggcccgtttaattttttgtccttgtaaaa 31155430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 108; Significance: 4e-54; HSPs: 2)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 23 - 219
Target Start/End: Original strand, 10956 - 11151
Alignment:
Q  23 cttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtccttgtaaaataaaaattcagaaatcagttcccgcnnnnnnnntctctctt 122  Q
    |||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||| | |||        ||| ||||    
T  10956 cttaaatattgcactcgtccctgcaaatatggcccgtttaaattttggtccttgtaaaataaaaattcagaaatcagtcctcgc-aaaaaaatctgtctt 11054  T
Q  123 ttaaaaatacccctgtgcccatttaagtcatgataagtcaccaaaatgcctacgtgtcgcacgctgattgaacccattctgtagtttttggaccctg 219  Q
    ||||||||||||||| ||||||||| || |||| |||||| ||||||||||||||| ||||||||||||||||||||| ||||| |||||| |||||    
T  11055 ttaaaaatacccctgggcccatttaggttatgacaagtcatcaaaatgcctacgtggcgcacgctgattgaacccattttgtagattttggtccctg 11151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 23 - 219
Target Start/End: Complemental strand, 11428 - 11233
Alignment:
Q  23 cttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtccttgtaaaataaaaattcagaaatcagttcccgcnnnnnnnntctctctt 122  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||| | |||        ||| ||||    
T  11428 cttaaatattgcactcgtccctgtaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtcctcgc-aaaaaaatctgtctt 11330  T
Q  123 ttaaaaatacccctgtgcccatttaagtcatgataagtcaccaaaatgcctacgtgtcgcacgctgattgaacccattctgtagtttttggaccctg 219  Q
    ||||||||||||||| ||||||||| || |||| |||||| ||||||||||||||| ||||||||||||||||||||| ||||| |||||| |||||    
T  11329 ttaaaaatacccctgggcccatttaggttatgacaagtcatcaaaatgcctacgtggcgcacgctgattgaacccattttgtagattttggtccctg 11233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 23 - 219
Target Start/End: Complemental strand, 7326 - 7136
Alignment:
Q  23 cttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtccttgtaaaataaaaattcagaaatcagttcccgcnnnnnnnntctctc-t 121  Q
    ||||||||||| | |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||        ||| || |    
T  7326 cttaaatattggattcgtccctgcaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc-aaaaaaatctgtctt 7228  T
Q  122 tttaaaaatacccctgtgcccatttaagtcatgataagtcaccaaaatgcctacgtgtcgcacgctgattgaacccattctgtagtttttggaccctg 219  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||      |||||| |||||||||||||||||||||  ||||||||||| |||||    
T  7227 tttaaaaatacccctgggcccatttaagtcatgacaagtcaccaa------tacgtggcgcacgctgattgaacccatttggtagtttttggtccctg 7136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 7015 - 7095
Alignment:
Q  18 taagccttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtccttgtaaaataaaaattcagaaatca 98  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||    
T  7015 taaggcttaaatattgcactcgttcctgcaaatatggtccgtttaagttttggtccttataaaataaaaattcagaaatca 7095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 60 - 219
Target Start/End: Original strand, 32959 - 33119
Alignment:
Q  60 ttaagttttcgtccttgtaaaataaaaattcagaaatcagttcccgcnnnnnnnn-tctctcttttaaaaatacccctgtgcccatttaagtcatgataa 158  Q
    ||||||||| ||||||||||||||||||||||||||||||| |||||         ||| |||||||||||||||||||  ||||| |||||||||| ||    
T  32959 ttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcaaaaaaaaatctgtcttttaaaaatacccctggacccatataagtcatgacaa 33058  T
Q  159 gtcaccaaaatgcctacgtgtcgcacgctgattgaacccattctgtagtttttggaccctg 219  Q
    |||||||||||||||| ||| ||||||||||||||||||||| |||||||||||| |||||    
T  33059 gtcaccaaaatgcctatgtggcgcacgctgattgaacccattttgtagtttttggtccctg 33119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 24 - 106
Target Start/End: Complemental strand, 33288 - 33206
Alignment:
Q  24 ttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtccttgtaaaataaaaattcagaaatcagttcccgc 106  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||    
T  33288 ttaaatattgcactcgtccctgcaaatatggtccgtttatgttttggtccttgtaaaataaaaattcagaaatcagtccccgc 33206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1408 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 23 - 98
Target Start/End: Original strand, 1746 - 1821
Alignment:
Q  23 cttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtccttgtaaaataaaaattcagaaatca 98  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||    
T  1746 cttaaatattgcactcgtccctgcaaatatggcccgtttaagttttggtccttctaaaataaaaattcagaaatca 1821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University