View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9323_low_9 (Length: 347)
Name: NF9323_low_9
Description: NF9323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9323_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-146; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 16 - 330
Target Start/End: Original strand, 49671182 - 49671496
Alignment:
| Q |
16 |
ttgattgccatctccacggtgatctagcaagaccaggcacactgccctggcatatcagaatgaaaattgccatagagacagcaagctcattggcttatct |
115 |
Q |
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| T |
49671182 |
ttgattgccatctccacggcaatctagcaagatcaggcacactgccatggcatatcaggatgaaaattgccatagagacagcaagctcattggcttatct |
49671281 |
T |
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| Q |
116 |
gcatgcttcaggcatcatccaccgtgatgtgaaaaccaaaaacattctcgtcacagataacttcagtgtcaaagttggagattttggtctttcaaggcta |
215 |
Q |
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| T |
49671282 |
gcatgcttcaggcatcatccaccgtgacgtaaaaaccaaaaacattctcctcacagataacttcagtgtcaaagttggagattttggtctttcaaggcta |
49671381 |
T |
|
| Q |
216 |
ttccccctcgatatcacccatgcatccacggcgccacaagggacaccgggttatgttgatccagaatatcatcaatgctaccagctcactagcaagagtg |
315 |
Q |
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| T |
49671382 |
ttccccctcgatatcacccatgcttccacggcaccacaagggacaccgggttatgttgatccagaatatcaccaatgctaccagcttactagcaagagtg |
49671481 |
T |
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| Q |
316 |
atgtatatagttttg |
330 |
Q |
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| T |
49671482 |
atgtatacagttttg |
49671496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 73 - 330
Target Start/End: Original strand, 49667267 - 49667524
Alignment:
| Q |
73 |
gaatgaaaattgccatagagacagcaagctcattggcttatctgcatgcttcaggcatcatccaccgtgatgtgaaaaccaaaaacattct-cgtcacag |
171 |
Q |
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| T |
49667267 |
gaattaaaattgccatagagactgctaatgccttggcttatctccatgcttctgggatcattcaccgtgacgtgaaaaccagcaacatacttcttgacgg |
49667366 |
T |
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| Q |
172 |
ataacttcagtgtcaaagttggagattttggtctttcaaggctattccccctcgatatcacccatgcatccacggcgccacaagggacaccgggttatgt |
271 |
Q |
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| T |
49667367 |
c-aattttggtgttaaagttgcagattttggcctttcaagactattccccgaggatgccactcatgtctccacagctccacaaggaacaccaggttacct |
49667465 |
T |
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| Q |
272 |
tgatccagaatatcatcaatgctaccagctcactagcaagagtgatgtatatagttttg |
330 |
Q |
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| T |
49667466 |
tgaccccgagtatcaccaattttatcagcttactagcaagagtgatgtatatagttttg |
49667524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 63 - 164
Target Start/End: Original strand, 49675428 - 49675529
Alignment:
| Q |
63 |
tggcatatcagaatgaaaattgccatagagacagcaagctcattggcttatctgcatgcttcaggcatcatccaccgtgatgtgaaaaccaaaaacattc |
162 |
Q |
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| T |
49675428 |
tggcatattcgaatgaaagttgccttagagactgctactgctttggcttatctccatgcttctgaaatcattcaccgtgatgtgaaaacaaacaacattc |
49675527 |
T |
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| Q |
163 |
tc |
164 |
Q |
| |
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|| |
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| T |
49675528 |
tc |
49675529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 163
Target Start/End: Original strand, 49692531 - 49692591
Alignment:
| Q |
103 |
cattggcttatctgcatgcttcaggcatcatccaccgtgatgtgaaaaccaaaaacattct |
163 |
Q |
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| T |
49692531 |
cattggcttatctacatgcttccgacatcattcaccgtgatgtcaaaaccaccaacattct |
49692591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 240 - 319
Target Start/End: Original strand, 49675605 - 49675684
Alignment:
| Q |
240 |
tccacggcgccacaagggacaccgggttatgttgatccagaatatcatcaatgctaccagctcactagcaagagtgatgt |
319 |
Q |
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| T |
49675605 |
tccacagctccacaaggaaccccgggatatatggatccggaatatcatcaatgctacaggcttacaagcaagagtgatgt |
49675684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 258 - 325
Target Start/End: Original strand, 22783729 - 22783796
Alignment:
| Q |
258 |
acaccgggttatgttgatccagaatatcatcaatgctaccagctcactagcaagagtgatgtatatag |
325 |
Q |
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| T |
22783729 |
acaccaggctatgttgatccagaatatcgtttatgctaccagctaacaaacaagagcgatgtatatag |
22783796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 286
Target Start/End: Complemental strand, 33644506 - 33644466
Alignment:
| Q |
246 |
gcgccacaagggacaccgggttatgttgatccagaatatca |
286 |
Q |
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| T |
33644506 |
gcgcctcaagggactccgggttatgttgatccacaatatca |
33644466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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