View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9324_low_1 (Length: 433)
Name: NF9324_low_1
Description: NF9324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9324_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 14 - 415
Target Start/End: Original strand, 9221714 - 9222115
Alignment:
| Q |
14 |
atatattcattaattttacaacattattcatgttaacagaaatggttgcataccagtctcatgaagggttccaagaagagcaatggctccataaacatat |
113 |
Q |
| |
|
||||||||||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9221714 |
atatattcattcattttataacattattcatgttaacagaaatagttgcataccagtctcatgaagggttccaagaagagcaatggctccataaacatat |
9221813 |
T |
|
| Q |
114 |
caatattcctgaattaggcacaaaaatgtatgtcattaaactgtaagaaatcttgattagttgaaaaaccacaatgatttaaattgttgttttcatcctt |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
9221814 |
caatattcctgaattaggcacaaaaatgtatgtcattaaactgtaagcaatcttgattagttgaaaaaccacaatgatttaaa-tgttgttttcatcctt |
9221912 |
T |
|
| Q |
214 |
ctattttgggaaaaccgccgttttgctccccctatttctaatcataaaattttggtccccc-tttcatttgatgacgtactaataaattgttcactttaa |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| | ||| |
|
|
| T |
9221913 |
ctattttgggaaaaccgccgttttgctccccctatttctaatcatagaattttggtcccccgtttcatttgatgacgtactaataaattgttcattctaa |
9222012 |
T |
|
| Q |
313 |
accttttgtatcatttcaattgatcttcttttgaccatgtatgtttggtcacgacttagtttaagcctctacttttgacaactcaacaattaagttttcg |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
9222013 |
accttttgtatcatttcaattgatcttcttttgactatgtatgtttggtcacgacttagtttaagcctctacttttgacgactcaacaattaagttttcg |
9222112 |
T |
|
| Q |
413 |
ttt |
415 |
Q |
| |
|
||| |
|
|
| T |
9222113 |
ttt |
9222115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 294 - 344
Target Start/End: Complemental strand, 10565644 - 10565594
Alignment:
| Q |
294 |
aataaattgttcactttaaaccttttgtatcatttcaattgatcttctttt |
344 |
Q |
| |
|
||||||||||||||| | ||||| ||||||||||||||||||||||||||| |
|
|
| T |
10565644 |
aataaattgttcactctcaacctcttgtatcatttcaattgatcttctttt |
10565594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 294 - 359
Target Start/End: Complemental strand, 33333904 - 33333839
Alignment:
| Q |
294 |
aataaattgttcactttaaaccttttgtatcatttcaattgatcttcttttgaccatgtatgtttg |
359 |
Q |
| |
|
||||||||||| |||| ||||| ||||||||||||||||||||||||||| || |||||| |||| |
|
|
| T |
33333904 |
aataaattgtttacttccaacctcttgtatcatttcaattgatcttcttttaactatgtatatttg |
33333839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 298 - 346
Target Start/End: Original strand, 33971160 - 33971208
Alignment:
| Q |
298 |
aattgttcactttaaaccttttgtatcatttcaattgatcttcttttga |
346 |
Q |
| |
|
||||||||||| ||| || || |||||||||||||||||||||||||| |
|
|
| T |
33971160 |
aattgttcactctaatccccttttatcatttcaattgatcttcttttga |
33971208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 294 - 344
Target Start/End: Original strand, 50815184 - 50815234
Alignment:
| Q |
294 |
aataaattgttcactttaaaccttttgtatcatttcaattgatcttctttt |
344 |
Q |
| |
|
||||||||||||| ||| |||||||| |||||||| ||||||||||||||| |
|
|
| T |
50815184 |
aataaattgttcattttcaaccttttatatcattttaattgatcttctttt |
50815234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University