View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9324_low_3 (Length: 392)
Name: NF9324_low_3
Description: NF9324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9324_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 17 - 382
Target Start/End: Complemental strand, 25850989 - 25850629
Alignment:
| Q |
17 |
agatatgtatttacattgatttatataattttctcaaaacttaatcggtgtctacatgacaatgtttatgttgtgtccggtgtccgtgtttcattataaa |
116 |
Q |
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| T |
25850989 |
agatatgtatttacattgatttatataattttctcaaaacttaatcggtgtctacatgacaatgtttatgttgtgtctg-tgtccgtgtttcattataaa |
25850891 |
T |
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| Q |
117 |
ttaagaaacaagcctcccttgcaagtatcgtaactcttaagcttcatccatccattagggggatattacaaccaatatagatggtctccacgggtttatt |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||| |
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| T |
25850890 |
ttaagaaacaagcctcccttgcaagtatcgtaactcttaagcttcatccatccatcagggg-atattacaaccaatatagatagtctccacgggtttatt |
25850792 |
T |
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| Q |
217 |
ctactatacaagaaacatgttaacgtgaaattgagggtgacaaccatcatatatatattgttgatttggagccaatattttcaacatgggggtgacaacc |
316 |
Q |
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| T |
25850791 |
ctactatacaagaaacatgttaacgtgaaattgagggtgacaaccatcatat--atatttttgatttggagccaatattttcaacatgggggtgacaacc |
25850694 |
T |
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| Q |
317 |
atagattgtaggannnnnnnnnngtcaaataaaaggttactacatttgtcgtgcgaaatatctctg |
382 |
Q |
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| T |
25850693 |
atagattgtaggattctttttttgtcaaataaaaggttactaca-atgtcgtgcaaaatatctctg |
25850629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 21 - 124
Target Start/End: Original strand, 25852372 - 25852475
Alignment:
| Q |
21 |
atgtatttacattgatttatataattttctcaaaacttaatcggtgtctacatgacaatgtttatgttgtgtccggtgtccgtgtttcattataaattaa |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||| ||| |||||||||||||||||||||| ||| |
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| T |
25852372 |
atgtatttacattgatttatataattttctcaaaacttaatcggtgtcgacatgataatgtctatgttatgtatggtgtccgtgtttcattataaaataa |
25852471 |
T |
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| Q |
121 |
gaaa |
124 |
Q |
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|||| |
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| T |
25852472 |
gaaa |
25852475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 195
Target Start/End: Complemental strand, 25869508 - 25869442
Alignment:
| Q |
129 |
cctcccttgcaagtatcgtaactcttaagcttcatccatccattagggggatattacaaccaatata |
195 |
Q |
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|||||||||||| |||| ||||||||| ||||||||||||| |||||| | ||| |||||||||| |
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| T |
25869508 |
cctcccttgcaaatatcataactcttatacttcatccatccactaggggtctcttagaaccaatata |
25869442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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