View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9325_low_2 (Length: 668)

Name: NF9325_low_2
Description: NF9325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9325_low_2
NF9325_low_2
[»] chr1 (13 HSPs)
chr1 (56-363)||(9359247-9359551)
chr1 (52-365)||(9335505-9335815)
chr1 (23-327)||(9244945-9245246)
chr1 (56-338)||(8959895-8960177)
chr1 (52-341)||(8924729-8925018)
chr1 (56-335)||(8936374-8936653)
chr1 (52-368)||(9306681-9306997)
chr1 (55-340)||(9475166-9475451)
chr1 (67-285)||(8945879-8946097)
chr1 (437-621)||(9244599-9244783)
chr1 (572-619)||(43383926-43383973)
chr1 (308-343)||(9239174-9239209)
chr1 (54-146)||(9093370-9093462)
[»] chr3 (1 HSPs)
chr3 (85-341)||(9168430-9168686)
[»] chr6 (1 HSPs)
chr6 (55-299)||(15912698-15912942)
[»] chr7 (2 HSPs)
chr7 (575-625)||(44441706-44441756)
chr7 (574-618)||(4874836-4874880)
[»] chr8 (2 HSPs)
chr8 (575-620)||(13628996-13629041)
chr8 (575-620)||(13729408-13729453)
[»] chr5 (2 HSPs)
chr5 (576-620)||(26675440-26675484)
chr5 (576-620)||(26947048-26947092)


Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 56 - 363
Target Start/End: Original strand, 9359247 - 9359551
Alignment:
Q  56 gaggaagggaggagcaattaccctcttgaattccgggatcaactacccgaattgtgtagtagttgtagttgattgacttcacatagtatttacccgaaaa 155  Q
    |||||| |||||||||||||||||||| |||| | |||||||||| |||||||||||| |    ||||||||||  || ||||||||||||||| |||||    
T  9359247 gaggaatggaggagcaattaccctcttcaattactggatcaactagccgaattgtgtaatttacgtagttgatttcctgcacatagtatttacctgaaaa 9359346  T
Q  156 cagagttaacactgtgatgttgttttcacaggataactcgtacttcggatcaccacagcttgttgggtcattcataagtcgaaaaggatgtgatatgttt 255  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9359347 cagagttaacacggtgatgttgttttcgcaggataactcgtacttcggatcaccacagcttgttgggtcattcataagtcgaaaaggatgtgatatgttt 9359446  T
Q  256 ttgattttaccacatgaagaaggtggacaatatgtttggttatttgtattagtaattgcatcacatgtttgatgaggatgatgatgcaatagtaacacag 355  Q
     ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||    
T  9359447 gtgattttgccgcatgaagaaggtggacaatatgtttggttatttgtattagtaattgcatcacatgtttgat---gatgatgatgcaatagtaacacag 9359543  T
Q  356 caaccacc 363  Q
     |||||||    
T  9359544 taaccacc 9359551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 180; E-Value: 7e-97
Query Start/End: Original strand, 52 - 365
Target Start/End: Original strand, 9335505 - 9335815
Alignment:
Q  52 tagcgaggaagggaggagcaattaccctcttgaattccgggatcaactacccgaattgtgtagtagttgtagttgattgacttcacatagtatttacccg 151  Q
    |||||||||| ||||||| ||| ||| |||| |||||| |||||||||| ||||||||||||||   |||||||||||  || ||||||||||||||| |    
T  9335505 tagcgaggaatggaggagtaatcaccttcttcaattcctggatcaactaaccgaattgtgtagtttatgtagttgatttcctgcacatagtatttacctg 9335604  T
Q  152 aaaacagagttaacactgtgatgttgttttcacaggataactcgtacttcggatcaccacagcttgttgggtcattcataagtcgaaaaggatgtgatat 251  Q
    |||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||| ||| |||||||||| |||||||||| ||||||   ||    
T  9335605 aaaacagagttaacgctgtgatgttgttttcgcaggataactcgtactttggatcaccacaggttgctgggtcattcttaagtcgaaacggatgtttgat 9335704  T
Q  252 gtttttgattttaccacatgaagaaggtggacaatatgtttggttatttgtattagtaattgcatcacatgtttgatgaggatgatgatgcaatagtaac 351  Q
    |||  ||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||   ||||||||||||||||||||    
T  9335705 gttgctgattttgccgcatgaagaaggtggacaatatgttttgttatttgtattagtaattgcatcacatgtttgat---gatgatgatgcaatagtaac 9335801  T
Q  352 acagcaaccaccat 365  Q
    |||| |||||||||    
T  9335802 acagtaaccaccat 9335815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 23 - 327
Target Start/End: Complemental strand, 9245246 - 9244945
Alignment:
Q  23 cgtatgtgagattggctgaggnnnnnnnntagcgaggaagggaggagcaattaccctcttgaattccgggatcaactacccgaattgtgtagtagttgta 122  Q
    ||||||||||||||| |||||        ||||||||||||||||||||| ||||||||| ||||||||||||||||| |  ||||||||||| ||||||    
T  9245246 cgtatgtgagattggatgaggataaaaaatagcgaggaagggaggagcaactaccctcttcaattccgggatcaactaacaaaattgtgtagttgttgta 9245147  T
Q  123 gttgattgacttcacatagtatttacccgaaaacagagttaacactgtgatgttgttttcacaggataactcgtacttcggatcaccacagcttgttggg 222  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  9245146 gttgattgccttcacatagtacttacccgaaaacagagttaacactgtgatgttgttttcgcaggataactcatacttcggatcaccacagcttgttggg 9245047  T
Q  223 tcattcataagtcgaaaaggatgtgatatgtttttgattttaccacatgaagaaggtggacaatatgtttggttatttgtattagtaattgcatcacatg 322  Q
    ||||||||||||||||| ||||||   |||||  ||||||| |||||||||||||||||||   || |||||||||||| ||||||||| |||||||| |    
T  9245046 tcattcataagtcgaaacggatgtttgatgttgctgatttttccacatgaagaaggtggac---atatttggttatttgaattagtaatggcatcacaag 9244950  T
Q  323 tttga 327  Q
    |||||    
T  9244949 tttga 9244945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 56 - 338
Target Start/End: Original strand, 8959895 - 8960177
Alignment:
Q  56 gaggaagggaggagcaattaccctcttgaattccgggatcaactacccgaattgtgtagtagttgtagttgattgacttcacatagtatttacccgaaaa 155  Q
    |||||| || |||||||| |||||||| ||||||||||||||||| ||||||||||||||  |||||||||||||| |||||||||||||||||||| ||    
T  8959895 gaggaatggtggagcaatcaccctcttcaattccgggatcaactaaccgaattgtgtagttattgtagttgattgatttcacatagtatttacccgacaa 8959994  T
Q  156 cagagttaacactgtgatgttgttttcacaggataactcgtacttcggatcaccacagcttgttgggtcattcataagtcgaaaaggatgtgatatgttt 255  Q
    || ||||||   ||||||||||||||| ||||||||||||||| |||||||||||||   ||||||||||| | ||||||||||||||||||||||||||    
T  8959995 caaagttaaggttgtgatgttgttttcgcaggataactcgtacctcggatcaccacatgatgttgggtcatccttaagtcgaaaaggatgtgatatgttt 8960094  T
Q  256 ttgattttaccacatgaagaaggtggacaatatgtttggttatttgtattagtaattgcatcacatgtttgatgaggatgatg 338  Q
       ||||| ||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||| |||||||    
T  8960095 ccaattttgccacatgaagaaggtggacaatatgtttggttactagtatttgtaattgcatcacatgtttgatgatgatgatg 8960177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 52 - 341
Target Start/End: Original strand, 8924729 - 8925018
Alignment:
Q  52 tagcgaggaagggaggagcaattaccctcttgaattccgggatcaactacccgaattgtgtagtagttgtagttgattgacttcacatagtatttacccg 151  Q
    |||||||||| ||||||||||| |||||||| |||||||||||||||||  |  ||||||||||  |||||||||||||| |||||||||||||||| ||    
T  8924729 tagcgaggaaaggaggagcaatcaccctcttcaattccgggatcaactattctgattgtgtagttattgtagttgattgatttcacatagtatttactcg 8924828  T
Q  152 aaaacagagttaacactgtgatgttgttttcacaggataactcgtacttcggatcaccacagcttgttgggtcattcataagtcgaaaaggatgtgatat 251  Q
    | || ||||||||   ||| ||||||||||| ||||||||||||||| |||||||||||||| ||||||| |||||| |||||||||| |||| |  |||    
T  8924829 acaatagagttaaagttgttatgttgttttcgcaggataactcgtacctcggatcaccacaggttgttggatcattcttaagtcgaaacggatattttat 8924928  T
Q  252 gtttttgattttaccacatgaagaaggtggacaatatgtttggttatttgtattagtaattgcatcacatgtttgatgaggatgatgatg 341  Q
    ||| |||||||| ||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||| ||||||||||    
T  8924929 gttgttgattttgccacatgaagaaggtggacaatatgtttggttactagtatttgtaattgcatcacatgtttgatgatgatgatgatg 8925018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 56 - 335
Target Start/End: Original strand, 8936374 - 8936653
Alignment:
Q  56 gaggaagggaggagcaattaccctcttgaattccgggatcaactacccgaattgtgtagtagttgtagttgattgacttcacatagtatttacccgaaaa 155  Q
    |||||| || |||||||| |||||||| ||||||||||||||||| ||||||||||||||  |||||||||||||| |||||||||||||||||||| ||    
T  8936374 gaggaatggtggagcaatcaccctcttcaattccgggatcaactaaccgaattgtgtagttattgtagttgattgatttcacatagtatttacccgacaa 8936473  T
Q  156 cagagttaacactgtgatgttgttttcacaggataactcgtacttcggatcaccacagcttgttgggtcattcataagtcgaaaaggatgtgatatgttt 255  Q
    ||||||||||| ||||||||||||||| ||||||||||| ||| | |||||||||||   |||||| |||| | |||||||||| ||||||| |||||||    
T  8936474 cagagttaacattgtgatgttgttttcgcaggataactcataccttggatcaccacatgatgttggatcatccttaagtcgaaatggatgtgttatgttt 8936573  T
Q  256 ttgattttaccacatgaagaaggtggacaatatgtttggttatttgtattagtaattgcatcacatgtttgatgaggatg 335  Q
     ||||||| || |||||||||||||||||  ||||||||||| | ||||| |||||||||||||||||||||||| ||||    
T  8936574 gtgattttgccgcatgaagaaggtggacagaatgtttggttactagtatttgtaattgcatcacatgtttgatgatgatg 8936653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 52 - 368
Target Start/End: Complemental strand, 9306997 - 9306681
Alignment:
Q  52 tagcgaggaagggaggagcaattaccctcttgaattccgggatcaactacccgaattgtgtagtagttgtagttgattgacttcacatagtatttacccg 151  Q
    |||||||| | ||||||||||| ||| |||||||||||  |||||||||| |  |||| |||||   ||||||||||||| ||||||||||||||||| |    
T  9306997 tagcgaggcatggaggagcaatcaccttcttgaattccaagatcaactactctcattgagtagtttctgtagttgattgatttcacatagtatttacctg 9306898  T
Q  152 aaaacagagttaacactgtgatgttgttttcacaggataactcgtacttcggatcaccacagcttgttgggtcattcataagtcgaaaaggatgtgatat 251  Q
    |||||| |||||||  ||||||||||||||| ||||||||||| ||| |||||||||| ||| ||| ||| ||||||  ||||||||||||||||  |||    
T  9306897 aaaacaaagttaacgttgtgatgttgttttcgcaggataactcatacctcggatcaccgcagtttgctggatcattctgaagtcgaaaaggatgttttat 9306798  T
Q  252 gtttttgattttaccacatgaagaaggtggacaatatgtttggttatttgtattagtaattgcatcacatgtttgatgaggatgatgatgcaatagtaac 351  Q
    |||| ||||| | |||||||| || | ||||||||||||||||||||| ||| |||||||||||| |||| |||||||| |||||| ||| ||||| |||    
T  9306797 gtttctgattgtgccacatgatgaggatggacaatatgtttggttattagtaatagtaattgcataacatctttgatgatgatgatcatgaaatagcaac 9306698  T
Q  352 acagcaaccaccatgaa 368  Q
    ||| |||| ||||||||    
T  9306697 acaacaactaccatgaa 9306681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 55 - 340
Target Start/End: Complemental strand, 9475451 - 9475166
Alignment:
Q  55 cgaggaagggaggagcaattaccctcttgaattccgggatcaactacccgaattgtgtagtagttgtagttgattgacttcacatagtatttacccgaaa 154  Q
    ||||||| |||| |||||| | ||||||||||||| ||||||||||  |  ||||||||||  | |||||||||||||||||||| ||| ||||||||||    
T  9475451 cgaggaatggagaagcaatcatcctcttgaattccaggatcaactagtctgattgtgtagttatcgtagttgattgacttcacattgtagttacccgaaa 9475352  T
Q  155 acagagttaacactgtgatgttgttttcacaggataactcgtacttcggatcaccacagcttgttgggtcattcataagtcgaaaaggatgtgatatgtt 254  Q
     || |||||||  ||||||||||||| | ||||||||||||||| |||||||||||||| ||||||| |||||| | |||||||| ||||||  ||||||    
T  9475351 gcaaagttaacgttgtgatgttgtttacgcaggataactcgtacctcggatcaccacaggttgttggatcattcttgagtcgaaacggatgttttatgtt 9475252  T
Q  255 tttgattttaccacatgaagaaggtggacaatatgtttggttatttgtattagtaattgcatcacatgtttgatgaggatgatgat 340  Q
    | ||| ||| |||||||||||||||||||||| ||||||||||||  || || |  | || ||||||||||||||| |||||||||    
T  9475251 tgtgagtttgccacatgaagaaggtggacaatttgtttggttattattactattggtagcctcacatgtttgatgatgatgatgat 9475166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 67 - 285
Target Start/End: Original strand, 8945879 - 8946097
Alignment:
Q  67 gagcaattaccctcttgaattccgggatcaactacccgaattgtgtagtagttgtagttgattgacttcacatagtatttacccgaaaacagagttaaca 166  Q
    ||||||| ||| ||||  ||||| |||||||||| ||||||||||||||  |||||||||||||| || |||| ||||||||| |||| |||  ||||||    
T  8945879 gagcaatcaccttcttttattccaggatcaactaaccgaattgtgtagttattgtagttgattgattttacatggtatttaccagaaagcagctttaaca 8945978  T
Q  167 ctgtgatgttgttttcacaggataactcgtacttcggatcaccacagcttgttgggtcattcataagtcgaaaaggatgtgatatgtttttgattttacc 266  Q
     ||||||||| ||||| ||||||||||||||| |||||||||| ||| ||| ||| |||||| ||||||| || ||||    ||||||  ||||||| ||    
T  8945979 ttgtgatgtttttttcgcaggataactcgtacctcggatcaccgcaggttgctggatcattcttaagtcggaagggatactttatgttgctgattttgcc 8946078  T
Q  267 acatgaagaaggtggacaa 285  Q
    |||||||||||| ||||||    
T  8946079 acatgaagaagggggacaa 8946097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 437 - 621
Target Start/End: Complemental strand, 9244783 - 9244599
Alignment:
Q  437 gaagttttgaagctctctatttagccgaccctttcctttgtagaaagggagacctacaaatttatctctccacatatcaaattagattctctacaatgat 536  Q
    |||||| ||| ||||||||||||||||||| ||||||| |||||||||||||| |||| |||||||||| || | ||||||| ||||||| | ||||  |    
T  9244783 gaagttatgatgctctctatttagccgaccatttccttagtagaaagggagacttacatatttatctctacaaacatcaaatgagattctgttcaatagt 9244684  T
Q  537 tagtttttatta---aatgaatgtaccaattcaatagttttttaaatgggtttcatatgtatatatcattcatttataattttttaac 621  Q
    |  ||||||| |   ||| ||   | ||||||  | ||| ||||||| ||||||||||||| | ||||||||||||||||||||||||    
T  9244683 t--tttttataaaccaataaagacatcaattc-ttggttatttaaataggtttcatatgtacacatcattcatttataattttttaac 9244599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 572 - 619
Target Start/End: Original strand, 43383926 - 43383973
Alignment:
Q  572 tttttaaatgggtttcatatgtatatatcattcatttataatttttta 619  Q
    |||||||| |||| ||||||||| ||||||||||||||||||||||||    
T  43383926 tttttaaacgggtctcatatgtacatatcattcatttataatttttta 43383973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 308 - 343
Target Start/End: Complemental strand, 9239209 - 9239174
Alignment:
Q  308 taattgcatcacatgtttgatgaggatgatgatgca 343  Q
    ||||||||||||||||||||||| ||||||||||||    
T  9239209 taattgcatcacatgtttgatgatgatgatgatgca 9239174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 54 - 146
Target Start/End: Complemental strand, 9093462 - 9093370
Alignment:
Q  54 gcgaggaagggaggagcaattaccctcttgaattccgggatcaactacccgaattgtgtagtagttgtagttgattgacttcacatagtattt 146  Q
    ||||||||  || ||||||||| | | ||||||||| ||||| |||| ||  |||||| | | |||||||||||| |||||||||| ||||||    
T  9093462 gcgaggaaatgaagagcaattatcttgttgaattccaggatccactagcctgattgtgaaattgttgtagttgatggacttcacattgtattt 9093370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 121; Significance: 1e-61; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 85 - 341
Target Start/End: Original strand, 9168430 - 9168686
Alignment:
Q  85 attccgggatcaactacccgaattgtgtagtagttgtagttgattgacttcacatagtatttacccgaaaacagagttaacactgtgatgttgttttcac 184  Q
    ||||| ||||||||||| |  ||||||||||  |||||||||||||| |||||||||||||||||| |||||||| ||| |  |||||||||||||||||    
T  9168430 attccaggatcaactactctgattgtgtagtttttgtagttgattgatttcacatagtatttaccccaaaacagacttagcgttgtgatgttgttttcac 9168529  T
Q  185 aggataactcgtacttcggatcaccacagcttgttgggtcattcataagtcgaaaaggatgtgatatgtttttgattttaccacatgaagaaggtggaca 284  Q
    |||||||||||||| |||||||||||||| ||||||| |||||  ||||||| || ||||||  ||||||| | ||||| ||||||||||||||||||||    
T  9168530 aggataactcgtacctcggatcaccacagtttgttggatcatttttaagtcggaacggatgttttatgtttctcattttgccacatgaagaaggtggaca 9168629  T
Q  285 atatgtttggttatttgtattagtaattgcatcacatgtttgatgaggatgatgatg 341  Q
      || |||||||||   ||||| || |||||||||||| ||||||| ||||||||||    
T  9168630 taatttttggttatcactattactagttgcatcacatgcttgatgatgatgatgatg 9168686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 93; Significance: 6e-45; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 55 - 299
Target Start/End: Complemental strand, 15912942 - 15912698
Alignment:
Q  55 cgaggaagggaggagcaattaccctcttgaattccgggatcaactacccgaattgtgtagtagttgtagttgattgacttcacatagtatttacccgaaa 154  Q
    ||||||| ||||||||||| ||||||||| |  |||| |||||||| || |||||||||||  || |||||||||  |  ||||||||| ||||| ||||    
T  15912942 cgaggaatggaggagcaatcaccctcttgcaacccggcatcaactaacctaattgtgtagtttttatagttgatttccaacacatagtacttacctgaaa 15912843  T
Q  155 acagagttaacactgtgatgttgttttcacaggataactcgtacttcggatcaccacagcttgttgggtcattcataagtcgaaaaggatgtgatatgtt 254  Q
    ||||| ||||   ||||||||||||||| ||||||||||||||  ||||||| |||||| | | |||||||||| |||||||||| ||||||  ||||||    
T  15912842 acagatttaaggttgtgatgttgttttcgcaggataactcgtagctcggatccccacaggtcgctgggtcattcttaagtcgaaatggatgttttatgtt 15912743  T
Q  255 tttgattttaccacatgaagaaggtggacaatatgtttggttatt 299  Q
      |||||||||| |||||||||| ||||||| |||||| ||||||    
T  15912742 gctgattttaccgcatgaagaagttggacaaaatgttttgttatt 15912698  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 575 - 625
Target Start/End: Complemental strand, 44441756 - 44441706
Alignment:
Q  575 ttaaatgggtttcatatgtatatatcattcatttataattttttaacggta 625  Q
    |||||||||| ||| ||||| | |||| |||||||||||||||||||||||    
T  44441756 ttaaatgggtctcaaatgtacacatcactcatttataattttttaacggta 44441706  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 574 - 618
Target Start/End: Original strand, 4874836 - 4874880
Alignment:
Q  574 tttaaatgggtttcatatgtatatatcattcatttataatttttt 618  Q
    ||||||||| ||| || ||||||||||||| ||||||||||||||    
T  4874836 tttaaatggattttatctgtatatatcatttatttataatttttt 4874880  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 575 - 620
Target Start/End: Original strand, 13628996 - 13629041
Alignment:
Q  575 ttaaatgggtttcatatgtatatatcattcatttataattttttaa 620  Q
    |||||||||| ||| ||||| | |||||||||||||||||||||||    
T  13628996 ttaaatgggtctcacatgtacacatcattcatttataattttttaa 13629041  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 575 - 620
Target Start/End: Original strand, 13729408 - 13729453
Alignment:
Q  575 ttaaatgggtttcatatgtatatatcattcatttataattttttaa 620  Q
    |||||||||| ||| ||||| | |||||||||||||||||||||||    
T  13729408 ttaaatgggtctcacatgtacacatcattcatttataattttttaa 13729453  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 576 - 620
Target Start/End: Original strand, 26675440 - 26675484
Alignment:
Q  576 taaatgggtttcatatgtatatatcattcatttataattttttaa 620  Q
    ||||||||| ||||||||| | |||| ||||||||||||||||||    
T  26675440 taaatgggtctcatatgtacacatcactcatttataattttttaa 26675484  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 576 - 620
Target Start/End: Original strand, 26947048 - 26947092
Alignment:
Q  576 taaatgggtttcatatgtatatatcattcatttataattttttaa 620  Q
    ||||||||| ||||||||| | |||| ||||||||||||||||||    
T  26947048 taaatgggtctcatatgtacacatcactcatttataattttttaa 26947092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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