View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9325_low_3 (Length: 526)
Name: NF9325_low_3
Description: NF9325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9325_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 387; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 57 - 510
Target Start/End: Complemental strand, 47731415 - 47730961
Alignment:
| Q |
57 |
aattgttgctgcaaaaaggaaatagtaaggccccatcaccctcttcttgatccaatttatagcgtcgtcgttagagaaaaaatcagattgattaaatcct |
156 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47731415 |
aattgttgctgcaaaaaggaaatagtaaggccccatcaccctgttcttgatccaatttatagtgtcgtcgttagagaaaaaatcagattgattaaatcct |
47731316 |
T |
|
| Q |
157 |
gcttgctgctacaagtgcttagaatgggttcaatcacacacacaaaatgaagaaaagtctcatcatatgcagaatgagctacatttctatgaatgggtca |
256 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
47731315 |
gcttgctgccacaagtgcttagaatgggttcaatcacacacacacaatgaagaaaagtctcatcatatgcagaatgggctacatttctatgaacgggtca |
47731216 |
T |
|
| Q |
257 |
g-ttcttcctctttctggtcatgcccttgatgttctcttggtttcatagagtcccttactccctgcattgacattcatgatatgttgctgtcggttaaag |
355 |
Q |
| |
|
| ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
47731215 |
ggttcttcctctttctggtcatgcccttggtgttctcttcgtttcatagagtcccttgctccctgcattgacattcatgatatgttgctgtcagttaaag |
47731116 |
T |
|
| Q |
356 |
atgttttctcttctggcagcccccatgctcacatcctttacactcagcttccctcatttgccatagatctcataaataatatgcaactcaatttcaatgc |
455 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
47731115 |
atgtattctcttctggcagcccccatgctcacattctttacactcagcttccctcatttgccatagacctcataaataatatgcaactcaatttcaatgc |
47731016 |
T |
|
| Q |
456 |
ttctgtagaggacgcattcatatggactcataacaaaaattgcatctacactgct |
510 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47731015 |
ttctgcagagaacgcattcatatggactcataacaaaaattgcatctacactgct |
47730961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 61 - 222
Target Start/End: Original strand, 50823362 - 50823520
Alignment:
| Q |
61 |
gttgctgcaaaaaggaaatagtaaggccccatcaccctcttcttgatccaatttatagcgtcgtcgttagagaaaaaatcagattgattaaatcctgctt |
160 |
Q |
| |
|
|||||||||||||||||| |||||| | ||||| | |||||||||||||||||||| || || |||||||||||||||||||||||||| ||||||| |
|
|
| T |
50823362 |
gttgctgcaaaaaggaaagggtaagggtc-atcactccattcttgatccaatttatagcatcctcattagagaaaaaatcagattgattaaaacctgctt |
50823460 |
T |
|
| Q |
161 |
gctgctacaagtgcttagaatgggttcaatcacacacacaaaatgaagaaaagtctcatcat |
222 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
50823461 |
gctgccacaagtgcttagaatgggtgcaatcacgcacac--aatgaagaaaagtctcatcat |
50823520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 350 - 495
Target Start/End: Complemental strand, 26334871 - 26334726
Alignment:
| Q |
350 |
ttaaagatgttttctcttctggcagcccccatgctcacatcctttacactcagcttccctcatttgccatagatctcataaataatatgcaactcaattt |
449 |
Q |
| |
|
|||||||||||||||||| | | ||| |||||| || || ||||||| |||||| || ||||||| |||||| ||||||||||||||||||| || || |
|
|
| T |
26334871 |
ttaaagatgttttctcttttaacggcctccatgcacaaattctttacattcagctaccttcatttgtcatagacctcataaataatatgcaacacaggtt |
26334772 |
T |
|
| Q |
450 |
caatgcttctgtagaggacgcattcatatggactcataacaaaaat |
495 |
Q |
| |
|
|||||||||| ||||||| | |||||||| |||||||||||||||| |
|
|
| T |
26334771 |
caatgcttctctagaggatgtattcatatcgactcataacaaaaat |
26334726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 61 - 213
Target Start/End: Original strand, 26334376 - 26334526
Alignment:
| Q |
61 |
gttgctgcaaaaaggaaatagtaaggccccatcaccctcttcttgatccaatttatagcgtcgtcgttagagaaaaaatcagattgattaaatcctgctt |
160 |
Q |
| |
|
|||||||||||||||||| ||| ||| ||||||||||| ||||||||||||||||||||||| || || ||||||| ||| ||||||||||| || | |
|
|
| T |
26334376 |
gttgctgcaaaaaggaaagagtgagggcccatcaccctattcttgatccaatttatagcgtcttcattggagaaaaggtcatattgattaaatatggcct |
26334475 |
T |
|
| Q |
161 |
gctgctacaagtgcttagaatgggttcaatcacacacacaaaatgaagaaaag |
213 |
Q |
| |
|
|| | ||||||| ||||||||||| |||||||||||| || |||||||||| |
|
|
| T |
26334476 |
actaccacaagtgtttagaatgggtgcaatcacacacataa--tgaagaaaag |
26334526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 47731538 - 47731491
Alignment:
| Q |
12 |
agagatgaaaggataagaagctttgagggtatcaatcataccttgaat |
59 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
47731538 |
agagatgaaaggataagaagctttgagggtatcaaccataccttgaat |
47731491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 83; Significance: 4e-39; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 257 - 455
Target Start/End: Original strand, 24873130 - 24873327
Alignment:
| Q |
257 |
gttcttcctctttctggtcatgcccttgatgttctcttggtttcatagagtcccttactccctgcattgacattcatgatatgttgctgtcggttaaaga |
356 |
Q |
| |
|
||||||||||||| ||||| |||||||| |||||||||||||||||| ||||||| | |||| |||||||||||||||| | |||| |||||||| |
|
|
| T |
24873130 |
gttcttcctctttttggtcttgcccttggagttctcttggtttcatagggtcccttgcaccctacattgacattcatgatttacaattgtcagttaaaga |
24873229 |
T |
|
| Q |
357 |
tgttttctcttctggcagcccccatgctcacatcctttacactcagcttccctcatttgccatagatctcataaataatatgcaactcaatttcaatgc |
455 |
Q |
| |
|
||| |||||||||| ||||||| |||| ||||||||||||||||| || || || || ||||||| ||||| |||||||||||| ||||||||||||| |
|
|
| T |
24873230 |
tgtattctcttctgccagcccc-atgcacacatcctttacactcaactgccttctttcaccatagacctcatcaataatatgcaattcaatttcaatgc |
24873327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 57 - 222
Target Start/End: Complemental strand, 24873730 - 24873567
Alignment:
| Q |
57 |
aattgttgctgcaaaaaggaaatagtaaggccccatcaccctc-ttcttgatccaatttatagcgtcgtcgttagagaaaaaatcagattgattaaatcc |
155 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||||||| | | |||| ||||||||||||| || | || ||| ||||||||| |||||||||| | |
|
|
| T |
24873730 |
aattgttgctgcaaaaaggaaagagtaagggcccatcacccccatccttggtccaatttatagcatcttaattggag-aaaaatcagcttgattaaattc |
24873632 |
T |
|
| Q |
156 |
tgcttgctgctacaagtgcttagaatgggttcaatcacacacacaaaatgaagaaaagtctcatcat |
222 |
Q |
| |
|
| || ||| ||| || ||||||||||| | ||||| ||| | ||||||||||||||||||||| |
|
|
| T |
24873631 |
gacatgttgccgcaaatgtttagaatgggtgctatcacgcacgc--aatgaagaaaagtctcatcat |
24873567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 57 - 94
Target Start/End: Original strand, 43709260 - 43709297
Alignment:
| Q |
57 |
aattgttgctgcaaaaaggaaatagtaaggccccatca |
94 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
43709260 |
aattgttgctgcaaaaaggaaatagtaagggcccatca |
43709297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 43709139 - 43709184
Alignment:
| Q |
14 |
agatgaaaggataagaagctttgagggtatcaatcataccttgaat |
59 |
Q |
| |
|
||||| |||||||| |||||| ||||||||||| |||||||||||| |
|
|
| T |
43709139 |
agatggaaggataacaagcttagagggtatcaaccataccttgaat |
43709184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 27154968 - 27154928
Alignment:
| Q |
19 |
aaaggataagaagctttgagggtatcaatcataccttgaat |
59 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
27154968 |
aaaggataagaagctttgagggtgtcaaccataccttgaat |
27154928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University