View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9325_low_5 (Length: 413)
Name: NF9325_low_5
Description: NF9325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9325_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 8149840 - 8149562
Alignment:
| Q |
1 |
atctaagagcgtgcaaaatggtaagtaatgaatccaattctttctttttctcaaggcacattcctgggggtttacaaatacaaattccaaactcacactc |
100 |
Q |
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| T |
8149840 |
atctaagagcgtgcaaaatggtaa----tgaatccaattctttctttttctcaaggcacattcctgggggtttacaaatacaaattacaaacacacactc |
8149745 |
T |
|
| Q |
101 |
ttatgtagcaggtactagctagcaatagcatgcagctatagttgttaatgtaattttcttaacttacatttaagtcatgtgctaatgaatcattgtatat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
8149744 |
ttatgtagcaggtactagctagcaatagcatgcagctatagttgttaatgtaattttcttaacttacatttaagtcatgtgataatgaatcattgtatat |
8149645 |
T |
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| Q |
201 |
tgactctgttgagaagagctacctatgcttagagaccgttttggtgtctttgcagttccatgccattttaagctaagcatata |
283 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |
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| T |
8149644 |
tgactctgttgagaagagctacctatgcttagagaccgttttcgtgtctttgcggttccatgccattttaagctaagcatata |
8149562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 281 - 394
Target Start/End: Complemental strand, 8149523 - 8149410
Alignment:
| Q |
281 |
atattatcattgtgtgtttttattcttttctaatcctcaattggagctacataatcctctgttttcgtaaagaaacaaacaaattgaactaaagcaaggg |
380 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8149523 |
atattatcattgtgtgtttttattcttttctaatcctcaattggagctacataatcctctgttttcgtaaagaaacaaacaaattgaactaaagcaaggg |
8149424 |
T |
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| Q |
381 |
tcatgggagcattc |
394 |
Q |
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|||||||||||||| |
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| T |
8149423 |
tcatgggagcattc |
8149410 |
T |
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