View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9325_low_7 (Length: 352)
Name: NF9325_low_7
Description: NF9325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9325_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 153 - 335
Target Start/End: Original strand, 21113749 - 21113931
Alignment:
| Q |
153 |
aatttcaaaccaccaaaattcaaccccatagcaccccctccaacagcccagcaaaattgccacaaaagaccccatacctacttcacaaaacaggctacac |
252 |
Q |
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| T |
21113749 |
aatttcaaaccaccaaaattcaaccccatagcaccgcctccaacagcccagcaaagttgccacaaaagaccccagacctacctcacaaaacaggctacac |
21113848 |
T |
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| Q |
253 |
aacacagcaactggtgctggactgtcatgacagcagcgctgccagtgaacagccagcaccgctagaccaaaaaacaacaagag |
335 |
Q |
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| T |
21113849 |
aacacagcaactggtgctggactgtcatgacagcagcgctgccagtgaacagccagcaccgctagaccaaaaaacaacaagag |
21113931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 4 - 326
Target Start/End: Complemental strand, 1161152 - 1160822
Alignment:
| Q |
4 |
caaagagacggtgacaataaaatacaaagatgccgcatataggcgttacatcaccc---------aaagacacaacctatagaaaatagttgatgactaa |
94 |
Q |
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| T |
1161152 |
caaagagacggtggcaataaaa-acaaagatgccacatataggcggaacatcaccccaaagacccaaagacataacctatagaaaacaattgatctctag |
1161054 |
T |
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| Q |
95 |
aaccaccaaaacaaacaagcacaacacctcaaaggcttgagctatggctctgaaatccaatttcaaaccaccaaaattcaaccccatagcaccccctcca |
194 |
Q |
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| T |
1161053 |
aaccacaaaaacaaacaatcacaacactacagaggcttgagttatggctctgaaatccaattatgaaccatcaaaattcaaccccttagcaccgcctcca |
1160954 |
T |
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| Q |
195 |
acagcccagcaaaattgccacaaaagaccccatacctacttcacaaaacaggctacacaacacagcaactggtgctggactgtcatgacagcagcgctgc |
294 |
Q |
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| T |
1160953 |
atagaccagcaaagctgccaccaaagaggccagaccttcctcaaaaaaccggctacacgacacaacaaaacttgctggactgtcatgacagcatcgctgc |
1160854 |
T |
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| Q |
295 |
cagtgaacagccagcaccgctagaccaaaaaa |
326 |
Q |
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| T |
1160853 |
cagtgagcagccaacaccactggaccaaaaaa |
1160822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 62
Target Start/End: Original strand, 6645907 - 6645964
Alignment:
| Q |
6 |
aagagacggtgacaataaaa-tacaaagatgccgcatataggcgttacatcacccaaa |
62 |
Q |
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|||||||||| ||| |||| ||||||||||| |||||||||||| |||||||||||| |
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| T |
6645907 |
aagagacggtaacagaaaaagtacaaagatgctgcatataggcgtaacatcacccaaa |
6645964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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