View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9325_low_9 (Length: 308)
Name: NF9325_low_9
Description: NF9325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9325_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 5770663 - 5770954
Alignment:
| Q |
1 |
ctaagtcaactttacaacattaccatgctcaaatatgcaaaatggacaaattagtgctattaacatgaactttgaaccctgctaatatttattctatctc |
100 |
Q |
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| T |
5770663 |
ctaagtcaactttacaacattaccatgctcaaatatgcaaaatggaccaattagtgctattaacatgaactttgaaccctgctaatattttttctatctc |
5770762 |
T |
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| Q |
101 |
cctcctaaaagcaatgaaaacaaatggaccaggcatgtgttgatgtataaacacgaaaacaaatgaaccacaattagcctctgcatannnnnnnaaaaag |
200 |
Q |
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| T |
5770763 |
cctcctaaaagcaatgaaaacaaatggaccaggcatgtgttgatgtataaacacgaaaacaaatgaaccacaattagtctctgcatatttttttaaaaag |
5770862 |
T |
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| Q |
201 |
agtaagaaagaaagatagatcatacatcggtaacttttatgcacagtttaaccccaatttatgtacataattacagaacatatggtaaaaga |
292 |
Q |
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| T |
5770863 |
agtaagaaagaaagatacatcatacatcagtaacttttatgcacagtttaaccccaatttgtgtacataattacagaacatgtggtaaaaga |
5770954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 33867386 - 33867095
Alignment:
| Q |
1 |
ctaagtcaactttacaacattaccatgctcaaatatgcaaaatggacaaattagtgctattaacatgaactttgaaccctgctaatatttattctatctc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33867386 |
ctaagtcaactttacaacattaccatgctcaaatatgcaaaatggaccaattagtgctattaacatgaactttgaaccctgctaatatttattctatctc |
33867287 |
T |
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| Q |
101 |
cctcctaaaagcaatgaaaacaaatggaccaggcatgtgttgatgtataaacacgaaaacaaatgaaccacaattagcctctgcatannnnnnnaaaaag |
200 |
Q |
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| T |
33867286 |
cctcctaaaagcaatgaaaacaaatggatcaggcatgcgttgatgtataaacaggaaaacaaatgaaccacaattagactctgcatatttttttaaaaag |
33867187 |
T |
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| Q |
201 |
agtaagaaagaaagatagatcatacatcggtaacttttatgcacagtttaaccccaatttatgtacataattacagaacatatggtaaaaga |
292 |
Q |
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| T |
33867186 |
agtaagaaagaaagatacatcatacatcagtaacttttatgcacagtttaacaccaatttgtgtacataattacagaacatatggtaaaaga |
33867095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 43904713 - 43904661
Alignment:
| Q |
3 |
aagtcaactttacaacattaccatgctcaaatatgcaaaatggacaaattagt |
55 |
Q |
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| T |
43904713 |
aagtcaactttacaacattaccatactcaaatatgcaaaatggaccaattagt |
43904661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 199 - 292
Target Start/End: Original strand, 5894049 - 5894142
Alignment:
| Q |
199 |
agagtaagaaagaaagatagatcatacatcggtaacttttatgcacagtttaaccccaatttatgtacataattacagaacatatggtaaaaga |
292 |
Q |
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||||||| ||||||||||| | ||||| || | |||||||||||||| ||||||| ||||| ||| |||||||||| ||||| |||||||||| |
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| T |
5894049 |
agagtaaaaaagaaagatacagcatacgtcagcaacttttatgcacaaattaaccctaatttgtgtgcataattacaaaacatgtggtaaaaga |
5894142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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