View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9326_high_12 (Length: 241)
Name: NF9326_high_12
Description: NF9326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9326_high_12 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 38468617 - 38468840
Alignment:
| Q |
1 |
ttctgccttactcgattaggactcaacctcaagtcaagctatgcttcattgtcaaagtatggtaaacgatcgacaacactgaaggttgtagcaactttat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
38468617 |
ttctgccttactcgattaggactcaacctcaagtcaagctatgcttcattgtcaaagtatggtaaacaatcgacaacactgaaggttgtagcaactttat |
38468716 |
T |
|
| Q |
101 |
aggtgcttaaagttttaccttgtaaatatgtccgtcttatgcacaactctgaacaaaccatcatctgttaaggaatcattggcatttggttgattaaaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38468717 |
aggtgcttaaagttttaccttgtaaatatgtccgtcttatgcacaactctgaacaaaccatcatctgttaaggaatcattggcatttggttgattaaaaa |
38468816 |
T |
|
| Q |
201 |
attgttcttttcgcatgtgtatct |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
38468817 |
attgttcttttcgcatgtgtatct |
38468840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 14 - 213
Target Start/End: Original strand, 38468004 - 38468210
Alignment:
| Q |
14 |
gattaggactcaacctcaagtcaagctatgcttcattgtcaaagtatggtaaacgatcgacaacactgaaggttgtagca---actttataggtgcttaa |
110 |
Q |
| |
|
|||||||||||| |||||| ||||| |||| ||||||||||||||| ||||| |||||||| || || || |||| | ||||||||||||||||| |
|
|
| T |
38468004 |
gattaggactcatcctcaaatcaagttatgattcattgtcaaagtacagtaaaagatcgacagcattgtagaatgtactactgactttataggtgcttaa |
38468103 |
T |
|
| Q |
111 |
agttttaccttgtaaatatgtccgt----cttatgcacaactctgaacaaaccatcatctgttaaggaatcattggcatttggttgattaaaaaattgtt |
206 |
Q |
| |
|
| ||||||| ||||| | || | | ||||||||||||| |||||||||||||||||||| ||||| ||||||||| ||||||| |||||||||| |
|
|
| T |
38468104 |
aattttaccatgtaagcaagttcattgatcttatgcacaactttgaacaaaccatcatctgttgaggaaatcttggcatttagttgatttaaaaattgtt |
38468203 |
T |
|
| Q |
207 |
cttttcg |
213 |
Q |
| |
|
| ||||| |
|
|
| T |
38468204 |
cctttcg |
38468210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University