View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9326_high_8 (Length: 255)

Name: NF9326_high_8
Description: NF9326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9326_high_8
NF9326_high_8
[»] chr5 (10 HSPs)
chr5 (3-216)||(37077626-37077839)
chr5 (131-179)||(7113630-7113678)
chr5 (136-205)||(972813-972883)
chr5 (33-95)||(973098-973160)
chr5 (6-79)||(2243315-2243388)
chr5 (138-176)||(2243339-2243377)
chr5 (216-246)||(37077557-37077587)
chr5 (138-176)||(41264387-41264425)
chr5 (135-176)||(973125-973166)
chr5 (33-82)||(7215322-7215371)
[»] chr1 (16 HSPs)
chr1 (135-194)||(52432656-52432716)
chr1 (135-180)||(46080981-46081026)
chr1 (33-81)||(5500843-5500891)
chr1 (135-205)||(2534436-2534507)
chr1 (147-201)||(3367746-3367801)
chr1 (47-82)||(11426631-11426666)
chr1 (137-180)||(42819631-42819674)
chr1 (154-204)||(45136757-45136808)
chr1 (130-180)||(10775173-10775223)
chr1 (33-79)||(52432836-52432882)
chr1 (33-90)||(10775155-10775212)
chr1 (136-204)||(34601630-34601699)
chr1 (33-82)||(45967852-45967901)
chr1 (33-82)||(46080971-46081020)
chr1 (136-194)||(38839682-38839739)
chr1 (43-87)||(42819616-42819660)
[»] chr2 (8 HSPs)
chr2 (136-202)||(2248957-2249024)
chr2 (33-79)||(16863459-16863505)
chr2 (135-204)||(38576957-38577027)
chr2 (136-192)||(16863453-16863510)
chr2 (135-201)||(16576236-16576303)
chr2 (6-82)||(16576248-16576324)
chr2 (136-202)||(34176630-34176697)
chr2 (49-82)||(38576810-38576843)
[»] chr6 (9 HSPs)
chr6 (140-203)||(20067902-20067966)
chr6 (39-90)||(32342592-32342643)
chr6 (131-170)||(32047194-32047233)
chr6 (131-180)||(32342610-32342659)
chr6 (31-79)||(20206479-20206527)
chr6 (31-79)||(22100502-22100550)
chr6 (141-190)||(20206481-20206531)
chr6 (141-190)||(22100504-22100554)
chr6 (131-176)||(7556132-7556177)
[»] chr3 (5 HSPs)
chr3 (138-208)||(7641829-7641900)
chr3 (33-82)||(54437806-54437855)
chr3 (136-169)||(45228345-45228378)
chr3 (138-170)||(54437657-54437689)
chr3 (136-180)||(54437816-54437860)
[»] chr8 (4 HSPs)
chr8 (135-179)||(32166655-32166699)
chr8 (135-201)||(6630559-6630626)
chr8 (136-189)||(31475039-31475092)
chr8 (33-82)||(32166661-32166710)
[»] chr4 (5 HSPs)
chr4 (3-82)||(15131571-15131650)
chr4 (33-95)||(20512694-20512756)
chr4 (31-81)||(25234224-25234274)
chr4 (136-206)||(20512848-20512919)
chr4 (135-179)||(15131595-15131639)
[»] chr7 (4 HSPs)
chr7 (33-82)||(29152353-29152402)
chr7 (6-82)||(34891533-34891609)
chr7 (135-176)||(34891547-34891588)
chr7 (136-180)||(7463858-7463902)
[»] scaffold1743 (1 HSPs)
scaffold1743 (135-203)||(770-838)


Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 3 - 216
Target Start/End: Complemental strand, 37077839 - 37077626
Alignment:
Q  3 atagagatcacatgttgaatgnnnnnnnttaagaaatttgatgtttttgagatgaaaatgctaactgattgtaagaaaaagctaaaatacatttacccca 102  Q
    |||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37077839 atagagatcacatgttgaatgaaaaaaattaagaaatttgatgtttttgagatgaaaatgctaactgattgtaagaaaaagctaaaatacatttacccca 37077740  T
Q  103 aataataaatatgattcaattataaatcgaatgagatgaagaagtttaatgttcttgagatgaaaatgataactgatttaagaataaagatggagaaaat 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37077739 aataataaatatgattcaattataaatcgaatgagatgaagaagtttaatgttcttgagatgaaaatgataactgatttaagaataaagatggagaaaat 37077640  T
Q  203 gaaaatctctttaa 216  Q
    ||||||||||||||    
T  37077639 gaaaatctctttaa 37077626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 131 - 179
Target Start/End: Original strand, 7113630 - 7113678
Alignment:
Q  131 gaatgagatgaagaagtttaatgttcttgagatgaaaatgataactgat 179  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  7113630 gaatgagatgaagaagtttaatattcttgagatgaaaatgataattgat 7113678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 136 - 205
Target Start/End: Complemental strand, 972883 - 972813
Alignment:
Q  136 agatgaagaagtttaatgttcttgagatgaaaatgataactga-tttaagaataaagatggagaaaatgaa 205  Q
    |||||||||||||| |||||||||||||||||||||||||| | ||||| |||||||| | | ||||||||    
T  972883 agatgaagaagtttgatgttcttgagatgaaaatgataactaattttaaaaataaagaggaaaaaaatgaa 972813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 33 - 95
Target Start/End: Complemental strand, 973160 - 973098
Alignment:
Q  33 aagaaatttgatgtttttgagatgaaaatgctaactgattgtaagaaaaagctaaaatacatt 95  Q
    ||||||||| ||||||||||||| |||||| ||||| ||||||||||||| | || |||||||    
T  973160 aagaaatttaatgtttttgagataaaaatgataactaattgtaagaaaaaaccaacatacatt 973098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 79
Target Start/End: Original strand, 2243315 - 2243388
Alignment:
Q  6 gagatcacatgttgaatgnnnnnnnttaagaaatttgatgtttttgagatgaaaatgctaactgattgtaagaa 79  Q
    ||||||||||||||||||       | ||||| ||||||||| |||||||||||||| ||||| ||||||||||    
T  2243315 gagatcacatgttgaatgaaggatatgaagaagtttgatgttcttgagatgaaaatggtaactaattgtaagaa 2243388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 176
Target Start/End: Original strand, 2243339 - 2243377
Alignment:
Q  138 atgaagaagtttaatgttcttgagatgaaaatgataact 176  Q
    |||||||||||| |||||||||||||||||||| |||||    
T  2243339 atgaagaagtttgatgttcttgagatgaaaatggtaact 2243377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 216 - 246
Target Start/End: Complemental strand, 37077587 - 37077557
Alignment:
Q  216 agaaaaaaccttcaagaacactaagaataat 246  Q
    |||||||||||||||||||||||||||||||    
T  37077587 agaaaaaaccttcaagaacactaagaataat 37077557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 176
Target Start/End: Complemental strand, 41264425 - 41264387
Alignment:
Q  138 atgaagaagtttaatgttcttgagatgaaaatgataact 176  Q
    ||||| |||||||||||||||||||||||||||| ||||    
T  41264425 atgaaaaagtttaatgttcttgagatgaaaatgacaact 41264387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 135 - 176
Target Start/End: Complemental strand, 973166 - 973125
Alignment:
Q  135 gagatgaagaagtttaatgttcttgagatgaaaatgataact 176  Q
    ||||||||||| ||||||||| ||||||| ||||||||||||    
T  973166 gagatgaagaaatttaatgtttttgagataaaaatgataact 973125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 82
Target Start/End: Original strand, 7215322 - 7215371
Alignment:
Q  33 aagaaatttgatgtttttgagatgaaaatgctaactgattgtaagaaaaa 82  Q
    ||||| ||||||||| |||||||||||||| ||  |||||||||||||||    
T  7215322 aagaagtttgatgttcttgagatgaaaatggtagttgattgtaagaaaaa 7215371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 135 - 194
Target Start/End: Complemental strand, 52432716 - 52432656
Alignment:
Q  135 gagatgaagaagtttaatgttcttgagatgaaaatgataactgatt-taagaataaagatg 194  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||    
T  52432716 gagatgaagaagtttaatgttcttgagatgaaaatggtaattgattataagaataaagatg 52432656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 135 - 180
Target Start/End: Complemental strand, 46081026 - 46080981
Alignment:
Q  135 gagatgaagaagtttaatgttcttgagatgaaaatgataactgatt 180  Q
    |||||||||||||||||||||||||||||||||||| ||| |||||    
T  46081026 gagatgaagaagtttaatgttcttgagatgaaaatggtaattgatt 46080981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 81
Target Start/End: Original strand, 5500843 - 5500891
Alignment:
Q  33 aagaaatttgatgtttttgagatgaaaatgctaactgattgtaagaaaa 81  Q
    ||||||||||||||||||||||| |||||| ||||||||| || |||||    
T  5500843 aagaaatttgatgtttttgagataaaaatggtaactgattatacgaaaa 5500891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 135 - 205
Target Start/End: Original strand, 2534436 - 2534507
Alignment:
Q  135 gagatgaagaagtttaatgttcttgagatgaaaatgataactga-tttaagaataaagatggagaaaatgaa 205  Q
    ||||||||||||||| ||||| ||||||||||| || ||| | | ||||| |||||||||| ||||||||||    
T  2534436 gagatgaagaagtttgatgtttttgagatgaaagtggtaaattattttaaaaataaagatgaagaaaatgaa 2534507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 147 - 201
Target Start/End: Complemental strand, 3367801 - 3367746
Alignment:
Q  147 tttaatgttcttgagatgaaaatgataactgat-ttaagaataaagatggagaaaa 201  Q
    |||||| ||||||||||||||| ||||||||||  |||||||||||||| ||||||    
T  3367801 tttaatattcttgagatgaaaacgataactgatcgtaagaataaagatgaagaaaa 3367746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 82
Target Start/End: Original strand, 11426631 - 11426666
Alignment:
Q  47 ttttgagatgaaaatgctaactgattgtaagaaaaa 82  Q
    |||||||||||||||| |||||||||||||||||||    
T  11426631 ttttgagatgaaaatggtaactgattgtaagaaaaa 11426666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 137 - 180
Target Start/End: Complemental strand, 42819674 - 42819631
Alignment:
Q  137 gatgaagaagtttaatgttcttgagatgaaaatgataactgatt 180  Q
    |||||| |||||| |||||||||||||||||||||||| |||||    
T  42819674 gatgaataagttttatgttcttgagatgaaaatgataattgatt 42819631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 154 - 204
Target Start/End: Original strand, 45136757 - 45136808
Alignment:
Q  154 ttcttgagatgaaaatgataactgatt-taagaataaagatggagaaaatga 204  Q
    |||||| ||||||||| |||||||||| |||||||||||||| |||||||||    
T  45136757 ttcttgcgatgaaaataataactgattgtaagaataaagatgaagaaaatga 45136808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 180
Target Start/End: Complemental strand, 10775223 - 10775173
Alignment:
Q  130 cgaatgagatgaagaagtttaatgttcttgagatgaaaatgataactgatt 180  Q
    |||| ||||||||||||||| |||||||| ||||||||||| ||| |||||    
T  10775223 cgaaagagatgaagaagtttgatgttcttaagatgaaaatggtaattgatt 10775173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 79
Target Start/End: Complemental strand, 52432882 - 52432836
Alignment:
Q  33 aagaaatttgatgtttttgagatgaaaatgctaactgattgtaagaa 79  Q
    ||||| |||||||||||||||| ||||||| ||||| ||||||||||    
T  52432882 aagaagtttgatgtttttgagaagaaaatgataactaattgtaagaa 52432836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 90
Target Start/End: Complemental strand, 10775212 - 10775155
Alignment:
Q  33 aagaaatttgatgtttttgagatgaaaatgctaactgattgtaagaaaaagctaaaat 90  Q
    ||||| ||||||||| || ||||||||||| ||| ||||| ||||||||| |||||||    
T  10775212 aagaagtttgatgttcttaagatgaaaatggtaattgattctaagaaaaaactaaaat 10775155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 136 - 204
Target Start/End: Original strand, 34601630 - 34601699
Alignment:
Q  136 agatgaagaagtttaatgttcttgagatgaaaatgataactgat-ttaagaataaagatggagaaaatga 204  Q
    ||||||| | |||| ||||| ||||||||||||| |||||| ||  |||||||||||||| |||||||||    
T  34601630 agatgaaaacgtttgatgtttttgagatgaaaataataactaatcgtaagaataaagatgaagaaaatga 34601699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 82
Target Start/End: Original strand, 45967852 - 45967901
Alignment:
Q  33 aagaaatttgatgtttttgagatgaaaatgctaactgattgtaagaaaaa 82  Q
    ||||||||| || ||||||| ||||||||| |||| ||||||||||||||    
T  45967852 aagaaatttaatatttttgaaatgaaaatgataacagattgtaagaaaaa 45967901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 82
Target Start/End: Complemental strand, 46081020 - 46080971
Alignment:
Q  33 aagaaatttgatgtttttgagatgaaaatgctaactgattgtaagaaaaa 82  Q
    ||||| ||| ||||| |||||||||||||| ||| |||||||||||||||    
T  46081020 aagaagtttaatgttcttgagatgaaaatggtaattgattgtaagaaaaa 46080971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 194
Target Start/End: Original strand, 38839682 - 38839739
Alignment:
Q  136 agatgaagaagtttaatgttcttgagatgaaaatgataactgatt-taagaataaagatg 194  Q
    ||||||||| |||| |||||||||||||||||||  ||||| ||| ||||||||||||||    
T  38839682 agatgaagaggtttgatgttcttgagatgaaaat--taactaattgtaagaataaagatg 38839739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 87
Target Start/End: Complemental strand, 42819660 - 42819616
Alignment:
Q  43 atgtttttgagatgaaaatgctaactgattgtaagaaaaagctaa 87  Q
    ||||| |||||||||||||| ||| ||||||||||||||| ||||    
T  42819660 atgttcttgagatgaaaatgataattgattgtaagaaaaaactaa 42819616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 136 - 202
Target Start/End: Original strand, 2248957 - 2249024
Alignment:
Q  136 agatgaagaagtttaatgttcttgagatgaaaatgataactgatt-taagaataaagatggagaaaat 202  Q
    |||||||||||||||||||| |||||||||||||| ||||| ||| |||||||||||||| |||||||    
T  2248957 agatgaagaagtttaatgtttttgagatgaaaatggtaactaattctaagaataaagatgaagaaaat 2249024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 33 - 79
Target Start/End: Complemental strand, 16863505 - 16863459
Alignment:
Q  33 aagaaatttgatgtttttgagatgaaaatgctaactgattgtaagaa 79  Q
    ||||||||||||||| |||||||||||||| ||||||||||||||||    
T  16863505 aagaaatttgatgttcttgagatgaaaatggtaactgattgtaagaa 16863459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 135 - 204
Target Start/End: Original strand, 38576957 - 38577027
Alignment:
Q  135 gagatgaagaagtttaatgttcttgagatgaaaatgataactgatt-taagaataaagatggagaaaatga 204  Q
    ||||||||||| |||||||||||| ||||||||||| ||||||||| ||| |||||| ||| |||||||||    
T  38576957 gagatgaagaactttaatgttctttagatgaaaatggtaactgattataaaaataaatatgaagaaaatga 38577027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 136 - 192
Target Start/End: Complemental strand, 16863510 - 16863453
Alignment:
Q  136 agatgaagaagtttaatgttcttgagatgaaaatgataactgatt-taagaataaaga 192  Q
    |||||||||| ||| |||||||||||||||||||| ||||||||| ||||||||||||    
T  16863510 agatgaagaaatttgatgttcttgagatgaaaatggtaactgattgtaagaataaaga 16863453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 135 - 201
Target Start/End: Complemental strand, 16576303 - 16576236
Alignment:
Q  135 gagatgaagaagtttaatgttcttgagatgaaaatgataactgatt-taagaataaagatggagaaaa 201  Q
    ||||||||||||||| |||||||||||| ||||||| ||| ||||| |||||| |||| || ||||||    
T  16576303 gagatgaagaagtttgatgttcttgagaggaaaatggtaattgattgtaagaaaaaaggtgaagaaaa 16576236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 82
Target Start/End: Complemental strand, 16576324 - 16576248
Alignment:
Q  6 gagatcacatgttgaatgnnnnnnnttaagaaatttgatgtttttgagatgaaaatgctaactgattgtaagaaaaa 82  Q
    ||||||||||||||||||       | ||||| ||||||||| |||||| ||||||| ||| |||||||||||||||    
T  16576324 gagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaattgattgtaagaaaaa 16576248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 136 - 202
Target Start/End: Complemental strand, 34176697 - 34176630
Alignment:
Q  136 agatgaagaagtttaatgttcttgagatgaaaatgataactgatt-taagaataaagatggagaaaat 202  Q
    |||||||||||||| || ||||| ||||||||||| ||||||||| ||  |||||||||| |||||||    
T  34176697 agatgaagaagtttgatattcttaagatgaaaatggtaactgattgtagaaataaagatgaagaaaat 34176630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 49 - 82
Target Start/End: Original strand, 38576810 - 38576843
Alignment:
Q  49 ttgagatgaaaatgctaactgattgtaagaaaaa 82  Q
    |||||||||||||| |||||||||||||||||||    
T  38576810 ttgagatgaaaatggtaactgattgtaagaaaaa 38576843  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 140 - 203
Target Start/End: Complemental strand, 20067966 - 20067902
Alignment:
Q  140 gaagaagtttaatgttcttgagatgaaaatgataactgatt-taagaataaagatggagaaaatg 203  Q
    |||||||| ||||||| |||||||||||||||||||||||| |||||||||| ||| ||||||||    
T  20067966 gaagaagtataatgttattgagatgaaaatgataactgattctaagaataaaaatgaagaaaatg 20067902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 32342643 - 32342592
Alignment:
Q  39 tttgatgtttttgagatgaaaatgctaactgattgtaagaaaaagctaaaat 90  Q
    |||||||||||||||||||||||| ||| ||||||||||||||| |||||||    
T  32342643 tttgatgtttttgagatgaaaatgataattgattgtaagaaaaaactaaaat 32342592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 170
Target Start/End: Complemental strand, 32047233 - 32047194
Alignment:
Q  131 gaatgagatgaagaagtttaatgttcttgagatgaaaatg 170  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  32047233 gaatgagatgaagaagtttgatgttcttgagatgaaaatg 32047194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 180
Target Start/End: Complemental strand, 32342659 - 32342610
Alignment:
Q  131 gaatgagatgaagaagtttaatgttcttgagatgaaaatgataactgatt 180  Q
    |||||||||||| |||||| ||||| |||||||||||||||||| |||||    
T  32342659 gaatgagatgaaaaagtttgatgtttttgagatgaaaatgataattgatt 32342610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 79
Target Start/End: Original strand, 20206479 - 20206527
Alignment:
Q  31 ttaagaaatttgatgtttttgagatgaaaatgctaactgattgtaagaa 79  Q
    ||||||| ||||||||| |||||||||||||| ||| ||||||||||||    
T  20206479 ttaagaagtttgatgttattgagatgaaaatgataattgattgtaagaa 20206527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 79
Target Start/End: Original strand, 22100502 - 22100550
Alignment:
Q  31 ttaagaaatttgatgtttttgagatgaaaatgctaactgattgtaagaa 79  Q
    ||||||| ||||||||| |||||||||||||| ||| ||||||||||||    
T  22100502 ttaagaagtttgatgttattgagatgaaaatgataattgattgtaagaa 22100550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 190
Target Start/End: Original strand, 20206481 - 20206531
Alignment:
Q  141 aagaagtttaatgttcttgagatgaaaatgataactgatt-taagaataaa 190  Q
    ||||||||| ||||| |||||||||||||||||| ||||| ||||||||||    
T  20206481 aagaagtttgatgttattgagatgaaaatgataattgattgtaagaataaa 20206531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 190
Target Start/End: Original strand, 22100504 - 22100554
Alignment:
Q  141 aagaagtttaatgttcttgagatgaaaatgataactgatt-taagaataaa 190  Q
    ||||||||| ||||| |||||||||||||||||| ||||| ||||||||||    
T  22100504 aagaagtttgatgttattgagatgaaaatgataattgattgtaagaataaa 22100554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 131 - 176
Target Start/End: Original strand, 7556132 - 7556177
Alignment:
Q  131 gaatgagatgaagaagtttaatgttcttgagatgaaaatgataact 176  Q
    |||||| ||||| || ||||||||||||||||||||||||| ||||    
T  7556132 gaatgatatgaataaatttaatgttcttgagatgaaaatgacaact 7556177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 138 - 208
Target Start/End: Complemental strand, 7641900 - 7641829
Alignment:
Q  138 atgaagaagtttaatgttcttgagatgaaaatgataactga-tttaagaataaagatggagaaaatgaaaat 208  Q
    ||||| |||||| |||||||||| || |||||||||||||| ||||||||||||| || |||||||||||||    
T  7641900 atgaaaaagtttgatgttcttgatataaaaatgataactgattttaagaataaagttgaagaaaatgaaaat 7641829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 82
Target Start/End: Complemental strand, 54437855 - 54437806
Alignment:
Q  33 aagaaatttgatgtttttgagatgaaaatgctaactgattgtaagaaaaa 82  Q
    ||||| ||||||||||||||||| |||||| |||||||||||||||||||    
T  54437855 aagaagtttgatgtttttgagattaaaatggtaactgattgtaagaaaaa 54437806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 136 - 169
Target Start/End: Original strand, 45228345 - 45228378
Alignment:
Q  136 agatgaagaagtttaatgttcttgagatgaaaat 169  Q
    ||||||| ||||||||||||||||||||||||||    
T  45228345 agatgaaaaagtttaatgttcttgagatgaaaat 45228378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 170
Target Start/End: Complemental strand, 54437689 - 54437657
Alignment:
Q  138 atgaagaagtttaatgttcttgagatgaaaatg 170  Q
    |||||||||||||||||| ||||||||||||||    
T  54437689 atgaagaagtttaatgttattgagatgaaaatg 54437657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 180
Target Start/End: Complemental strand, 54437860 - 54437816
Alignment:
Q  136 agatgaagaagtttaatgttcttgagatgaaaatgataactgatt 180  Q
    |||||||||||||| ||||| ||||||| |||||| |||||||||    
T  54437860 agatgaagaagtttgatgtttttgagattaaaatggtaactgatt 54437816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 135 - 179
Target Start/End: Original strand, 32166655 - 32166699
Alignment:
Q  135 gagatgaagaagtttaatgttcttgagatgaaaatgataactgat 179  Q
    ||||||||||||||| |||||||||||||||||||||||| ||||    
T  32166655 gagatgaagaagtttgatgttcttgagatgaaaatgataattgat 32166699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 135 - 201
Target Start/End: Original strand, 6630559 - 6630626
Alignment:
Q  135 gagatgaagaagtttaatgttcttgagatgaaaatgataactgattt-aagaataaagatggagaaaa 201  Q
    ||||||||||| ||||||| |||| ||||||||||| ||| |||||| ||||||||||| | ||||||    
T  6630559 gagatgaagaaatttaatgatcttaagatgaaaatggtaattgatttgaagaataaagacgaagaaaa 6630626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 136 - 189
Target Start/End: Complemental strand, 31475092 - 31475039
Alignment:
Q  136 agatgaagaagtttaatgttcttgagatgaaaatgataactgatttaagaataa 189  Q
    |||||||||||||| ||||||||||||| |||||  ||||||||| || |||||    
T  31475092 agatgaagaagtttgatgttcttgagataaaaatagtaactgattcaaaaataa 31475039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 82
Target Start/End: Original strand, 32166661 - 32166710
Alignment:
Q  33 aagaaatttgatgtttttgagatgaaaatgctaactgattgtaagaaaaa 82  Q
    ||||| ||||||||| |||||||||||||| ||| |||| ||||||||||    
T  32166661 aagaagtttgatgttcttgagatgaaaatgataattgatagtaagaaaaa 32166710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 82
Target Start/End: Original strand, 15131571 - 15131650
Alignment:
Q  3 atagagatcacatgttgaatgnnnnnnnttaagaaatttgatgtttttgagatgaaaatgctaactgattgtaagaaaaa 82  Q
    |||||||||||||| ||||||       | ||||||||||||||| ||||||| |||||| |||||||| ||||||||||    
T  15131571 atagagatcacatgctgaatgaaggagatgaagaaatttgatgttcttgagataaaaatggtaactgatagtaagaaaaa 15131650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 33 - 95
Target Start/End: Original strand, 20512694 - 20512756
Alignment:
Q  33 aagaaatttgatgtttttgagatgaaaatgctaactgattgtaagaaaaagctaaaatacatt 95  Q
    |||||| || |||||||||||||||||| | ||||| ||||||||||||| | ||||||||||    
T  20512694 aagaaacttaatgtttttgagatgaaaaagataactaattgtaagaaaaaaccaaaatacatt 20512756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 25234224 - 25234274
Alignment:
Q  31 ttaagaaatttgatgtttttgagatgaaaatgctaactgattgtaagaaaa 81  Q
    ||||||||||||||||| |||||||||||||| ||||||||  ||||||||    
T  25234224 ttaagaaatttgatgttcttgagatgaaaatggtaactgatgctaagaaaa 25234274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 136 - 206
Target Start/End: Original strand, 20512848 - 20512919
Alignment:
Q  136 agatgaagaagtttaatgttcttgagatgaaaatgataactga-tttaagaataaagatggagaaaatgaaa 206  Q
    |||||||||||||| |||||  | |||||||||||| || ||| ||||| |||||||||| |||||||||||    
T  20512848 agatgaagaagtttgatgtttataagatgaaaatgacaattgattttaaaaataaagatgaagaaaatgaaa 20512919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 179
Target Start/End: Original strand, 15131595 - 15131639
Alignment:
Q  135 gagatgaagaagtttaatgttcttgagatgaaaatgataactgat 179  Q
    ||||||||||| ||| ||||||||||||| |||||| ||||||||    
T  15131595 gagatgaagaaatttgatgttcttgagataaaaatggtaactgat 15131639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 82
Target Start/End: Original strand, 29152353 - 29152402
Alignment:
Q  33 aagaaatttgatgtttttgagatgaaaatgctaactgattgtaagaaaaa 82  Q
    ||||| ||||||||| |||||||||||||  |||||||||||||||||||    
T  29152353 aagaagtttgatgttattgagatgaaaatagtaactgattgtaagaaaaa 29152402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 82
Target Start/End: Complemental strand, 34891609 - 34891533
Alignment:
Q  6 gagatcacatgttgaatgnnnnnnnttaagaaatttgatgtttttgagatgaaaatgctaactgattgtaagaaaaa 82  Q
    ||||||||||||||||||       | ||||||||||||||| ||||||| |||||| ||||| || ||||||||||    
T  34891609 gagatcacatgttgaatgaaggagatgaagaaatttgatgttcttgagatcaaaatgataactaatagtaagaaaaa 34891533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 135 - 176
Target Start/End: Complemental strand, 34891588 - 34891547
Alignment:
Q  135 gagatgaagaagtttaatgttcttgagatgaaaatgataact 176  Q
    ||||||||||| ||| ||||||||||||| ||||||||||||    
T  34891588 gagatgaagaaatttgatgttcttgagatcaaaatgataact 34891547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 180
Target Start/End: Complemental strand, 7463902 - 7463858
Alignment:
Q  136 agatgaagaagtttaatgttcttgagatgaaaatgataactgatt 180  Q
    |||||||||||||| |||||||| | |||||||||||||| ||||    
T  7463902 agatgaagaagtttgatgttcttcaaatgaaaatgataaccgatt 7463858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1743 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1743
Description:

Target: scaffold1743; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 203
Target Start/End: Complemental strand, 838 - 770
Alignment:
Q  135 gagatgaagaagtttaatgttcttgagatgaaaatgataactgatttaagaataaagatggagaaaatg 203  Q
    ||||||||||||||| || | ||||| | ||||||||||| |||| ||| |||||| ||| ||||||||    
T  838 gagatgaagaagtttgatatacttgaaaggaaaatgataaatgatgtaaaaataaaaatgaagaaaatg 770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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