View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9326_low_10 (Length: 383)
Name: NF9326_low_10
Description: NF9326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9326_low_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 18 - 370
Target Start/End: Original strand, 1743160 - 1743512
Alignment:
| Q |
18 |
aaatcaatagcatttaatctgttcaagctcacgaatgagtcaatcaaatccaagttaataggtaggggtgtcaaaccaggtccatgtattcttttctttt |
117 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
1743160 |
aaatcaatagcatttaatcttttcaagctcacgaatgaatcgatcaaatccaagttaataggtaagggagtcaaaccaggtccatgtattcttttctttt |
1743259 |
T |
|
| Q |
118 |
caatgttaaaagaaatggaagacaaacttggcctcattcggatagcaaaagcaattccagcttgggatatcttgaaacattggaagaatgaaatttcttc |
217 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
1743260 |
cgatgttaaaagaaatggaagacaaacttggcctcattcggatagcagaagcaattccatcttgggatatcttgaagcattggaagaatgaaatttcttc |
1743359 |
T |
|
| Q |
218 |
caatgatctgcagttctggcatagagacaaaagtgatttatcagttatcaagtgattaccggaaagatcgatcctgcgcagattctcaagcatggaagat |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
1743360 |
caatgatctgcagttctggcatagagacaaaagagatttatcagtgatcaagtgattaccagaaagatcgatcttgcacagattctcaagcatggaagac |
1743459 |
T |
|
| Q |
318 |
agccttagtaatccaaaatcagatgcttgagaatccaaaggaaagctgatgtc |
370 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1743460 |
agccttagtaatccaaaatcagatgcttgagaatccaaaggaaagctaatgtc |
1743512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 370
Target Start/End: Complemental strand, 2007222 - 2006870
Alignment:
| Q |
18 |
aaatcaatagcatttaatctgttcaagctcacgaatgagtcaatcaaatccaagttaataggtaggggtgtcaaaccaggtccatgtattcttttctttt |
117 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
2007222 |
aaatcaatagcttttaatctcttcaagctcacgaatgaatcgatcaaatccaagttaataggtaggggtgtcaaaccaggtccatgtcttcttttctttt |
2007123 |
T |
|
| Q |
118 |
caatgttaaaagaaatggaagacaaacttggcctcattcggatagcaaaagcaattccagcttgggatatcttgaaacattggaagaatgaaatttcttc |
217 |
Q |
| |
|
|||||||||| || || |||| |||||||||| |||||||||| ||| ||||||||||| |||||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
2007122 |
caatgttaaaggatatcgaagccaaacttggcatcattcggatcgcagaagcaattccaacttgggatattttgaaacattggaagaataaaatttcttc |
2007023 |
T |
|
| Q |
218 |
caatgatctgcagttctggcatagagacaaaagtgatttatcagttatcaagtgattaccggaaagatcgatcctgcgcagattctcaagcatggaagat |
317 |
Q |
| |
|
|| |||||| ||||||||||||||||||||||| |||||||| || | ||||||||||| |||||||| || ||||||||||||| |||||||||||| |
|
|
| T |
2007022 |
cagtgatctacagttctggcatagagacaaaagggatttatcggtggttaagtgattaccagaaagatcaattttgcgcagattctcgagcatggaagat |
2006923 |
T |
|
| Q |
318 |
agccttagtaatccaaaatcagatgcttgagaatccaaaggaaagctgatgtc |
370 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
2006922 |
taccttattaatccaaaatcagatgcttgagaatccaaaggaaagctaatgtc |
2006870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 49 - 213
Target Start/End: Complemental strand, 1498639 - 1498475
Alignment:
| Q |
49 |
cgaatgagtcaatcaaatccaagttaataggtaggggtgtcaaaccaggtccatgtattcttttcttttcaatgttaaaagaaatggaagacaaacttgg |
148 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||||| |||| ||||||||||||| |||||||||||||| |||||||||||||||| |||||| || |
|
|
| T |
1498639 |
cgaatgagtcagtcaaatccaatttaataggtaggggtttcaatccaggtccatgtagtcttttcttttcaacgttaaaagaaatggaacccaaactagg |
1498540 |
T |
|
| Q |
149 |
cctcattcggatagcaaaagcaattccagcttgggatatcttgaaacattggaagaatgaaattt |
213 |
Q |
| |
|
| ||| ||| ||| || ||| ||| |||||| |||||| |||||| |||||||||||||| |
|
|
| T |
1498539 |
aattattttgattgcacaaacaaggccaacttgggttatcttaaaacatgtgaagaatgaaattt |
1498475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 76
Target Start/End: Complemental strand, 374029 - 373967
Alignment:
| Q |
14 |
atcaaaatcaatagcatttaatctgttcaagctcacgaatgagtcaatcaaatccaagttaat |
76 |
Q |
| |
|
|||| |||||||| |||||||||| || |||||||||||||| | ||||||| ||||||||| |
|
|
| T |
374029 |
atcataatcaataacatttaatcttttgaagctcacgaatgaaacgatcaaattcaagttaat |
373967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University