View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9326_low_12 (Length: 328)
Name: NF9326_low_12
Description: NF9326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9326_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 69 - 314
Target Start/End: Complemental strand, 29022978 - 29022733
Alignment:
| Q |
69 |
ctcagtttctgcatattccttccatttttccacaaccttcttcactgtttctacacacttcctcatctctcaatactcagctgcaatttcttcctctatc |
168 |
Q |
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||||||| || ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |
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| T |
29022978 |
ctcagttgctacatatcccttccatttctccacaaccttcttcactgtttctacacacttcctcatctctcaatacgcagctgctatttcttcctctatc |
29022879 |
T |
|
| Q |
169 |
tcgcaataatttcattccattctttctatcatccttattgaataaactgaaagcttctttgtgcaatgaccttcaacttgaagaaggaaattcagatatg |
268 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |
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| T |
29022878 |
tcgcaataatttcattccattctttctaccatccttattgaataaactgaaagcttctttgtgcaatgaccttcaacttgcagaaggaaattcagatctg |
29022779 |
T |
|
| Q |
269 |
tgtggttgaaattcagatatgtgtggttgagttttaaggtaaaata |
314 |
Q |
| |
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||||||||| |||||||| ||||||||||||||| ||||||||||| |
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| T |
29022778 |
tgtggttgatattcagatctgtgtggttgagtttcaaggtaaaata |
29022733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 69 - 314
Target Start/End: Complemental strand, 23357993 - 23357748
Alignment:
| Q |
69 |
ctcagtttctgcatattccttccatttttccacaaccttcttcactgtttctacacacttcctcatctctcaatactcagctgcaatttcttcctctatc |
168 |
Q |
| |
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||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||| |
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| T |
23357993 |
ctcagtttcggcatatcccttccatttctccacaaccttcttcactgtttctacacacttcctcatctcttaatacacaattgcaatttcttcctctatc |
23357894 |
T |
|
| Q |
169 |
tcgcaataatttcattccattctttctatcatccttattgaataaactgaaagcttctttgtgcaatgaccttcaacttgaagaaggaaattcagatatg |
268 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |
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| T |
23357893 |
tcgcaataatttcattccattctttctaccatccttattgaataaactgaaagcttctttgtgcaatgaccttcaacttacagaaggaaattcagatctg |
23357794 |
T |
|
| Q |
269 |
tgtggttgaaattcagatatgtgtggttgagttttaaggtaaaata |
314 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||| ||||||||||| |
|
|
| T |
23357793 |
tgtggttgaaattcagatctatgtggttgagtttcaaggtaaaata |
23357748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 74 - 314
Target Start/End: Original strand, 41740967 - 41741207
Alignment:
| Q |
74 |
tttctgcatattccttccatttttccacaaccttcttcactgtttctacacacttcctcatctctcaatactcagctgcaatttcttcctctatctcgca |
173 |
Q |
| |
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||||||||||| ||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||| || |||||||||||||||||||||| || |
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| T |
41740967 |
tttctgcatatcccttcaatttctccacaaccttcttcacggtttctacacacttcctcatctctcaatacacaactgcaatttcttcctctatctcaca |
41741066 |
T |
|
| Q |
174 |
ataatttcattccattctttctatcatccttattgaataaactgaaagcttctttgtgcaatgaccttcaacttgaagaaggaaattcagatatgtgtgg |
273 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||| |
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| T |
41741067 |
ataatttcattccattctttctaccatccttattgaataaactgaaagcttctttgtgcaatgaccttcgacttgcagaaggaaattcagatccttgtga |
41741166 |
T |
|
| Q |
274 |
ttgaaattcagatatgtgtggttgagttttaaggtaaaata |
314 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
41741167 |
ttgaaattcagatatgtgtggttgagttccaaggtaaaata |
41741207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 76 - 314
Target Start/End: Original strand, 292096 - 292334
Alignment:
| Q |
76 |
tctgcatattccttccatttttccacaaccttcttcactgtttctacacacttcctcatctctcaatactcagctgcaatttcttcctctatctcgcaat |
175 |
Q |
| |
|
||||||||| |||||||||| ||||||| ||||||||| |||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||| |
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| T |
292096 |
tctgcatatcccttccatttctccacaaacttcttcacggtttctacacactttctcatctctcaatacacagttgcaatttcttcctctatctcgcaat |
292195 |
T |
|
| Q |
176 |
aatttcattccattctttctatcatccttattgaataaactgaaagcttctttgtgcaatgaccttcaacttgaagaaggaaattcagatatgtgtggtt |
275 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||||||||||| | |||||||||||||| ||||||||| |
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| T |
292196 |
aatttcattccattctttctaccatccttattaaataaactgaaagcttatttgtgcaatgaccttcaacttgcaaaaggaaattcagatctgtgtggtt |
292295 |
T |
|
| Q |
276 |
gaaattcagatatgtgtggttgagttttaaggtaaaata |
314 |
Q |
| |
|
||||||| ||| ||| || |||||||| ||||||||||| |
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| T |
292296 |
gaaattctgatctgtctgattgagtttcaaggtaaaata |
292334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 134; Significance: 1e-69; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 69 - 277
Target Start/End: Original strand, 28987668 - 28987879
Alignment:
| Q |
69 |
ctcagtttctgcatattccttccatttttccacaaccttcttcactgtttctacacacttcctcatctctcaatactcagctgcaatttct---tcctct |
165 |
Q |
| |
|
||||||||||| | | |||||||||| |||||||| ||||||||||||||||||| ||||||||||||| ||||| ||| |||||||||| |||||| |
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| T |
28987668 |
ctcagtttctgtgtttcccttccatttctccacaactttcttcactgtttctacacccttcctcatctcttaatacacagttgcaatttcttcttcctct |
28987767 |
T |
|
| Q |
166 |
atctcgcaataatttcattccattctttctatcatccttattgaataaactgaaagcttctttgtgcaatgaccttcaacttgaagaaggaaattcagat |
265 |
Q |
| |
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||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||| |
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|
| T |
28987768 |
atctctcaataatttcattccattctttctaccatccttattgaataagctgaaagcttccttgtgcaatgaccttcaacttgcagaaggaaattcagat |
28987867 |
T |
|
| Q |
266 |
atgtgtggttga |
277 |
Q |
| |
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||||||||||| |
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|
| T |
28987868 |
ctgtgtggttga |
28987879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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