View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9326_low_3 (Length: 433)
Name: NF9326_low_3
Description: NF9326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9326_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 399; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Original strand, 51417983 - 51418398
Alignment:
| Q |
1 |
actactatagctacctatcaatattcttcaatatccaaaacagcaacatcaaatcaaaccaacattctctctctttctttgcccttgtcctaactttttc |
100 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51417983 |
actactatagctacctaacaatattcttcaatatccaaaacagcaacatcaaatcaaaccaacattctctctctttctttgcccttgtcctaactttttc |
51418082 |
T |
|
| Q |
101 |
tttcctttaaattcataggagtataactcacaagtcttccctcacaaaactaacacagatcttaaccaataatcccattgcctttgttacaattttgctg |
200 |
Q |
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| T |
51418083 |
tttcctttaaattcataggagta--actcacaagtcttccctcacaaaactaacacagatcttaaccaataatcccattgcctttgttacaattttgctg |
51418180 |
T |
|
| Q |
201 |
ttctttctctcccataaattgctaatcattaatgaaactagacacagaaacagagtggtgtctccctaacaatgttacagacattacatgcatggataaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51418181 |
ttctttctctcccataaattgctaatcattaatgaaactagacacagaaacagattggtgtctccctaacaatgttacagacattacatgcatggataaa |
51418280 |
T |
|
| Q |
301 |
caaccaacggtggtaattgagaaagtgagcaaaactgtgcgtttactaggttttctgatacaaaacggtgtctctaagagtcatagagttatgcaggata |
400 |
Q |
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| T |
51418281 |
caaccaacggtggtaattgagaaagtgagcaaaactgtgcgtttactaggttttctgatacaaaacggtgtctctaagagtcatagagttatgcaggata |
51418380 |
T |
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| Q |
401 |
tgcaagaagtgatgaaga |
418 |
Q |
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| T |
51418381 |
tgcaagaagtgatgaaga |
51418398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 231 - 418
Target Start/End: Original strand, 51413158 - 51413345
Alignment:
| Q |
231 |
aatgaaactagacacagaaacagagtggtgtctccctaacaatgttacagacattacatgcatggataaacaaccaacggtggtaattgagaaagtgagc |
330 |
Q |
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||||||||| | |||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||| ||||||||| ||||| |
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| T |
51413158 |
aatgaaacttcatacagaaacagagtgctgtctccctaataatgtgacagacattacatgcatggataaccaaccaacggtggtgattgagaaattgagc |
51413257 |
T |
|
| Q |
331 |
aaaactgtgcgtttactaggttttctgatacaaaacggtgtctctaagagtcatagagttatgcaggatatgcaagaagtgatgaaga |
418 |
Q |
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||||| ||||||||||||||||| || ||||||||||||||||||||||| | ||||| || || |||||||||||||||||||||| |
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| T |
51413258 |
aaaacggtgcgtttactaggtttcatgttacaaaacggtgtctctaagagtaacagagtgatacaagatatgcaagaagtgatgaaga |
51413345 |
T |
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