View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9326_low_33 (Length: 230)
Name: NF9326_low_33
Description: NF9326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9326_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 7 - 128
Target Start/End: Complemental strand, 36954851 - 36954732
Alignment:
| Q |
7 |
tacttacttcctcagtctcaaattgaatgacctaattatggtcgaaatatgttatgtgaatactccaaaaagttaaactaaactaggagaggagatgata |
106 |
Q |
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| T |
36954851 |
tacttacttcctcagtctcaaattgaatgacctaattatggtcgaaatatgttatgtgaatactccaaaaagttaaactaaactaggagaggagatg--a |
36954754 |
T |
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| Q |
107 |
tagtgatgcgtttggctggatg |
128 |
Q |
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| T |
36954753 |
tagtgatgcgtttggctggatg |
36954732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 141 - 224
Target Start/End: Complemental strand, 36954679 - 36954596
Alignment:
| Q |
141 |
ggggattatccttattattgtcatgaaaacatgatgaactggaattgcttgacattaagatccaatccaagtattatgtaattt |
224 |
Q |
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| T |
36954679 |
ggggattatccttattattgtcatgaaaacatgatgaactggaattgcttgacattaagatccaatccaagtattatgtaattt |
36954596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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