View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9326_low_7 (Length: 415)
Name: NF9326_low_7
Description: NF9326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9326_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 409
Target Start/End: Complemental strand, 25796390 - 25795978
Alignment:
| Q |
1 |
ctgtacctgcagcaaagctttatagggcaaaaagatccttgagaatttagcaggagatctacaacactagctgttgaggcagctgctgctagtgtcaggg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25796390 |
ctgtacctgcagcaaagctttatagggcaaaaagatccttgagaatttagcaggagatctacaacactagctgttgaggcagctgctgctagtgtcaggg |
25796291 |
T |
|
| Q |
101 |
ttgataatacctgtagcagataaactagagttatcaacctattggctgctagtttcttatccaaatgcatgtatggactgacgtcgagttcaaagtgcca |
200 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25796290 |
ttgataatacctgtagcaaataaactagagttatcaacctattggctgctagtttcttatccaaatgcatgtatggactgacgtcgagttcaaagtgcca |
25796191 |
T |
|
| Q |
201 |
ccgtaacttcatcatattaatcgtcaattcaaacatgtactaagttagcttataaatcagaaagaa----agtacatacccaatctccaacaacaataat |
296 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
25796190 |
ctgtaacttcatcatattaatcgtcaattcaaacatgtactaagttagcttataaatcagaaagaaaagtactacatacccaatctccaacaacaataat |
25796091 |
T |
|
| Q |
297 |
caacaatattcctggttgacgactgggacatttgactagtactgagtatccatcaaccaatgctaatgtgaaactccaaggtataaccaaacccatgatt |
396 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25796090 |
caacaatattcctggttgacgaatgggacatttgactagtactgagtatccatctaccaatgctaatgtgaaactccaaggtataaccaaacccatgatt |
25795991 |
T |
|
| Q |
397 |
gtcaccaaatagc |
409 |
Q |
| |
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||||||||||||| |
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| T |
25795990 |
gtcaccaaatagc |
25795978 |
T |
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