View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9327_high_1 (Length: 841)
Name: NF9327_high_1
Description: NF9327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9327_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 585 - 834
Target Start/End: Complemental strand, 6486616 - 6486367
Alignment:
| Q |
585 |
gttcgatgacccttagctcactagacgagctatttggattctttgcatgaacatggtgcagttcgctgcagaaccatttgatgtaaactgaatttgagtt |
684 |
Q |
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| T |
6486616 |
gttcgatgacccttagctcactagacgagctatttggattctttgcatgtacatggtgcagttcgctgcagaaccgtttgatgtaaactgaatttgagtt |
6486517 |
T |
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| Q |
685 |
cacaaacggctctgcaatgtgctgcaccatacagagaatccaaatctaaataaaatgttattgtatcctaaaattaatcgttgctaacttataattaatt |
784 |
Q |
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| T |
6486516 |
cacaaacggctctgcaatgtgctgcaccatacagagaatccaaatctaaataaaatgttattgtatcctaaaattaatcgttgctaacttataattaatt |
6486417 |
T |
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| Q |
785 |
tgaaatttggaattcagattaagtggtgagggctcaccaatgatgatgtc |
834 |
Q |
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| T |
6486416 |
tgaaatttggaattcagattaagtggtgagggctcaccaatgatgatgtc |
6486367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 372 - 524
Target Start/End: Complemental strand, 6486830 - 6486678
Alignment:
| Q |
372 |
acaacaataataacattcctcgtccacagtttatgcaatccgaaccccgattttccacaacagaagcctatactgacgatgactatgccatgcgtagcag |
471 |
Q |
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| T |
6486830 |
acaacaacaataacattcctcgtccacagtttatgcaatccgaaccccgattttccacaacagaagcctatactgacgatgactatgccatgcgtagcag |
6486731 |
T |
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| Q |
472 |
cagcgccgcctcccccatgagcccttactactacgaccctggaaggtctctcc |
524 |
Q |
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| T |
6486730 |
cagcgccgcctcccccatgagcccttactactacgaccctggaaggtctctcc |
6486678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 147; E-Value: 5e-77
Query Start/End: Original strand, 19 - 169
Target Start/End: Complemental strand, 6487186 - 6487036
Alignment:
| Q |
19 |
catacatgatttgtttactattcatttccacaccatatttattatatttatacatttttatatgctatctctctttcctctctcccgctcaacttaacag |
118 |
Q |
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| T |
6487186 |
catacatgatttgtttactattcatttccacaccatatttattatatttatacatttttatatgctctctctctttcctctctcccgctcaacttaacag |
6487087 |
T |
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| Q |
119 |
cttcctttcccatttctttagcccaaccaatcaatcaaagtcttcatttag |
169 |
Q |
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| T |
6487086 |
cttcctttcccatttctttagcccaaccaatcaatcaaagtcttcatttag |
6487036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 252 - 335
Target Start/End: Complemental strand, 6486954 - 6486867
Alignment:
| Q |
252 |
gtgtctgaatcggtgaaagagtaacaaacaaacaaaca----tcttgaatgatagtgagataagagagaaaagaggacatcatgtttg |
335 |
Q |
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| T |
6486954 |
gtgtctgaatcggtgaaagagtaacaaacaaacaaacaaacatcttgaatgatagtgagataagagagaaaagaggacatcatgtttg |
6486867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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