View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9327_high_2 (Length: 400)
Name: NF9327_high_2
Description: NF9327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9327_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 7 - 397
Target Start/End: Complemental strand, 39076810 - 39076419
Alignment:
| Q |
7 |
attatgaccatactaacattaagttttcacagcatgcataaaacataccaactgcattttaactttagatgtttg-ccatcaaagttggaagtgatgcaa |
105 |
Q |
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| T |
39076810 |
attatgaccatactaacattaagttttcacagcatgcataaaacataccaactgcattttaactttagatgtttgaccatcaaagttggaagtgatgcaa |
39076711 |
T |
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| Q |
106 |
cttctcatatcatataccagctatgtaatgtgtgtacgttacatgcactaaaattgaaaacgagtacattatgcatgcactaaaaattaaactttcaaga |
205 |
Q |
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| T |
39076710 |
cttctcatatcatataccagctatgtaatgtgtgtacgttacatgcactaaaattgaaaacgagtacattatgcatgcactaaaaattaaactttcaaga |
39076611 |
T |
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| Q |
206 |
ccctcnnnnnnnnnttaacctttcaagacctaacacgagggaaacgagtatagtacatgtacttcaaattgaattaacccttcacaacccaagatatata |
305 |
Q |
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| T |
39076610 |
ccctctaaaaaaaattaacctttcaagacctaacacgagggaaacgagtatagtacatgtactacaaattaaattaacctttcacaactcaggatatata |
39076511 |
T |
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| Q |
306 |
agaatgtatgaaagatatatattccctatattatattgcttatctcatcacatttcttattctattcattccccttgattcactcaacacca |
397 |
Q |
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| T |
39076510 |
agaatgtatgaaggatatatatactctatattatattgcttatctcatcacatttcttattctattcattccccttgattcactcaacacca |
39076419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 254
Target Start/End: Complemental strand, 39077251 - 39077217
Alignment:
| Q |
220 |
ttaacctttcaagacctaacacgagggaaacgagt |
254 |
Q |
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| T |
39077251 |
ttaacctttcaagacctaacgcgagggaaacgagt |
39077217 |
T |
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