View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9327_high_8 (Length: 228)
Name: NF9327_high_8
Description: NF9327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9327_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 124; Significance: 6e-64; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 19 - 214
Target Start/End: Original strand, 10553632 - 10553827
Alignment:
| Q |
19 |
atactcaagaagacaaattatagaatcaattcttggtctctaaagtgaaactacatacacatatggaaaaagaatactgatatatttacggaaccatttt |
118 |
Q |
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| T |
10553632 |
atactcaagaagacaaattatagaatcaattcttggtctctaaagtgaaactacatacacgtatggaaaaagaatactgatatatttacagaaccatttt |
10553731 |
T |
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| Q |
119 |
gcgacaacttttgagataannnnnnnnnnnnnnnnnnnnattgatcaaaaacaataaagagaaaataaaaatataacgaaagtatgagaaagagtt |
214 |
Q |
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| T |
10553732 |
gctacaacttttgagataatcttcttcttctttcttcttattgatcaaaaacaataaagagaaaataaaaatataacgaaagtatgagaaagagtt |
10553827 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 209
Target Start/End: Original strand, 26014734 - 26014763
Alignment:
| Q |
180 |
aaaataaaaatataacgaaagtatgagaaa |
209 |
Q |
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| T |
26014734 |
aaaataaaaatataacgaaagtatgagaaa |
26014763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 207
Target Start/End: Original strand, 51250245 - 51250294
Alignment:
| Q |
158 |
attgatcaaaaacaataaagagaaaataaaaatataacgaaagtatgaga |
207 |
Q |
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||||||| ||||||||||||||| ||||| ||||||||| ||||||||| |
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| T |
51250245 |
attgatctaaaacaataaagagagaataagaatataacgtgagtatgaga |
51250294 |
T |
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