View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9327_low_10 (Length: 290)
Name: NF9327_low_10
Description: NF9327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9327_low_10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 18 - 275
Target Start/End: Complemental strand, 27559403 - 27559146
Alignment:
| Q |
18 |
ctacattaagagctaaacttctaggaagaccaacaaaggattgcttattttctgatcctgctagagatggaaagaggtaaaaaatccataattctctagc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
27559403 |
ctacattaagagctaaacttctaggaagaccaacaaaggattgcttattttctgatcctgctagagatggaaagaggtaaagaatccataattatctagc |
27559304 |
T |
|
| Q |
118 |
tacctaactttacttacttgacaaattgatatatcggattgttctttgctcgtggattttgttactacagtctcctaaatatatggaacatgaatgacta |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
27559303 |
tacctaactttacttacttgacaaattgatatatcgaattgttctttgctcgtggattttgttactacagtctcctaaagatatggaacatgaatgacta |
27559204 |
T |
|
| Q |
218 |
ttctggagttgttggggtattcaattgccaaggagctggttggtgcaaagttggaaag |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27559203 |
ttctggagttgttggggtattcaattgccaaggagctggttggtgcaaagttggaaag |
27559146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 22 - 275
Target Start/End: Original strand, 42351521 - 42351774
Alignment:
| Q |
22 |
attaagagctaaacttctaggaagaccaacaaaggattgcttattttctgatcctgctagagatggaaagaggtaaaaaatccataattctctagctacc |
121 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
42351521 |
attaagagctaaacttccaggaagaccaaccaaggattgcttattttctgatcctgctagagatggaaagaggtaaagaatccataattctctagctacc |
42351620 |
T |
|
| Q |
122 |
taactttacttacttgacaaattgatatatcggattgttctttgctcgtggattttgttactacagtctcctaaatatatggaacatgaatgactattct |
221 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||||||| ||||||| |||||||||||| | |||||||||||| |||||||||||||||||||||||| |
|
|
| T |
42351621 |
taactttaattacttgacaaattgatatatcagattgttttttgctcatggattttgttatttcagtctcctaaagatatggaacatgaatgactattct |
42351720 |
T |
|
| Q |
222 |
ggagttgttggggtattcaattgccaaggagctggttggtgcaaagttggaaag |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42351721 |
ggagttgttggggtattcaattgccaaggagctggttggtgcaaagttggaaag |
42351774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 192 - 262
Target Start/End: Original strand, 50917068 - 50917138
Alignment:
| Q |
192 |
ctaaatatatggaacatgaatgactattctggagttgttggggtattcaattgccaaggagctggttggtg |
262 |
Q |
| |
|
||||| ||| |||||||||||||| ||||||||||| ||| |||||||||||| |||||||| |||||||| |
|
|
| T |
50917068 |
ctaaagatacggaacatgaatgaccattctggagttattgaggtattcaattgtcaaggagccggttggtg |
50917138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University