View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9327_low_13 (Length: 286)
Name: NF9327_low_13
Description: NF9327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9327_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 13 - 271
Target Start/End: Original strand, 39263670 - 39263928
Alignment:
| Q |
13 |
aaggctaaagcttcctcaacaacaacaatgttcaagggtcaagtcactgattaaagagcttggacttgatcatgttgctggtactagaattggtgatgat |
112 |
Q |
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| T |
39263670 |
aaggctaaagcttcctcaacaacaacaatgttcaagggtcaagtcactgattaaagagcttggacttgatcatgttgctggtactagaattggtgatgat |
39263769 |
T |
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| Q |
113 |
cgagtccgaggtatatcaggcggtgaaaggcgaagagtttctattggtgttgaagtcatacatgatccaaaagttttgattcttgacgaaccaacttcag |
212 |
Q |
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| T |
39263770 |
cgagtccgaggtatatcaggcggtgaaaggcgaagagtttctattggtgttgaagtcatacatgatccaaaagttttgattcttgatgaaccaacttcag |
39263869 |
T |
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| Q |
213 |
ggcttgatagtacttcagctttgcaaattattgacatgcttaaggttatggctgaaact |
271 |
Q |
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| T |
39263870 |
ggcttgatagtacttcagctttgcaaattattgacatgcttaaggttatggctgaaact |
39263928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 116 - 268
Target Start/End: Original strand, 44067506 - 44067658
Alignment:
| Q |
116 |
gtccgaggtatatcaggcggtgaaaggcgaagagtttctattggtgttgaagtcatacatgatccaaaagttttgattcttgacgaaccaacttcagggc |
215 |
Q |
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| T |
44067506 |
gtccgcggaatatccggtggtgagaggcgccgtgtttccattggtgttgaagtcatacatgatccaaaagtgttgattcttgatgaagcaacttcaggtc |
44067605 |
T |
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| Q |
216 |
ttgatagtacttcagctttgcaaattattgacatgcttaaggttatggctgaa |
268 |
Q |
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| T |
44067606 |
ttgacagtacctcagctctgcaaataattgatatgctgaaagtcatggctgaa |
44067658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 122 - 165
Target Start/End: Complemental strand, 32413517 - 32413474
Alignment:
| Q |
122 |
ggtatatcaggcggtgaaaggcgaagagtttctattggtgttga |
165 |
Q |
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| T |
32413517 |
ggtatatcaggcggggaaaggcgtagagtttccattggtgttga |
32413474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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