View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9327_low_7 (Length: 319)
Name: NF9327_low_7
Description: NF9327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9327_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 19 - 310
Target Start/End: Original strand, 331700 - 331991
Alignment:
| Q |
19 |
tggaacatgccaataagttttgcaaatccttcatcaatcatcatcacactgaggaaaatcttgaagcaggttagttggtttgcattagtacgttatatat |
118 |
Q |
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| T |
331700 |
tggaacatgccaataagttttgcaaatccttcttcaatcatcatcacactgaggaaaatcttgaagcaggttagttggttttcattagtacgttatatat |
331799 |
T |
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| Q |
119 |
gattcatgtcaaataatcaatgatttctggttttgtatttgatcagaaacaaggcaaaatggaaatccacaagacttgatgagaatgtcagcagtatgca |
218 |
Q |
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| T |
331800 |
gattcatgtcaaataatcaatgatttctggttttgtatttgatcagaaacaaggcaaaatggaaatccacaagacttgatgagaatgtcagcagtatgca |
331899 |
T |
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| Q |
219 |
acaatgacctaacagctcaagagcatgaattttacaacatagtattaccctcagttagagaagaaagtccacttcctcgtactattacctcc |
310 |
Q |
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| T |
331900 |
acaaggacctaacagctcaagagcatgaattttacaacatagtattaccctcagttagagaagaaagtccacttcctcgtactattacctcc |
331991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 1107304 - 1107264
Alignment:
| Q |
19 |
tggaacatgccaataagttttgcaaatccttcatcaatcat |
59 |
Q |
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| T |
1107304 |
tggaacatgccaataagtattgcaaatccttcttcaatcat |
1107264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 11250542 - 11250617
Alignment:
| Q |
19 |
tggaacatgccaataagttttgcaaatccttcatcaatcatcatcacactgaggaaaatcttgaagcaggttagttggtttg |
100 |
Q |
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| T |
11250542 |
tggaacatgccaataagttttgcaaatccttca------atcatcacactgaggaaaatcttgaagccggttagttggtttg |
11250617 |
T |
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