View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9328_high_5 (Length: 223)
Name: NF9328_high_5
Description: NF9328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9328_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 17 - 214
Target Start/End: Original strand, 19795645 - 19795842
Alignment:
| Q |
17 |
ccaagtacttctcaaacctctccttatcatgcttcaaaaacttctccttataaaacttcatcgccacagaagcaaccctattgtaaggaatcaaacccca |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
19795645 |
ccaagtacttctcaaacctctccttatcatgcttcaaaaacttctccttataaaacttcatcgccacagaagcaaccctattgtatggaatcaaacccca |
19795744 |
T |
|
| Q |
117 |
ttgattagcaccaataaacacctcaggcaactccaacaccttcctcaacggcaccaacacatctttcctcaaacgatcacgaaccctataagaataat |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
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| T |
19795745 |
ttgattagcaccaataaacacctcaggcaactccaacaccttcctcaacggcaccaacacatctttcctcaaccgatcacgaaccctataagcataat |
19795842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 19785941 - 19785745
Alignment:
| Q |
18 |
caagtacttctcaaacctctccttatcatgcttcaaaaacttctccttataaaacttcatcgccacagaagcaaccctattgtaaggaatcaaaccccat |
117 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
19785941 |
caagtacttctcaaacctctccttatcatgcttcaaaaacttttccttataaaacttcatcgccacagaagcaactctattgtaaggaatcaaaccccat |
19785842 |
T |
|
| Q |
118 |
tgattagcaccaataaacacctcaggcaactccaacaccttcctcaacggcaccaacacatctttcctcaaacgatcacgaaccctataagaataat |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
19785841 |
tgattagcaccaataaacacctcaggcaactccaacaccttcctcaacggcaccaacacatctttcctcaaacgatcacgaaccctataagcataat |
19785745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 18 - 214
Target Start/End: Original strand, 15834953 - 15835149
Alignment:
| Q |
18 |
caagtacttctcaaacctctccttatcatgcttcaaaaacttctccttataaaacttcatcgccacagaagcaaccctattgtaaggaatcaaaccccat |
117 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||| |
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| T |
15834953 |
caagtacttctcaaacctctcctcatcatgcttcaaaaacttctccttataaaactccatggccacagaagcaaccctattataaggaatcaaaccccat |
15835052 |
T |
|
| Q |
118 |
tgattagcaccaataaacacctcaggcaactccaacaccttcctcaacggcaccaacacatctttcctcaaacgatcacgaaccctataagaataat |
214 |
Q |
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|||||||| |||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
15835053 |
tgattagccccaataaacacctcaggcaattgcaacgccttcctcaacggcaccaacacatctttcctcaaacgatcacgaaccctataagcataat |
15835149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 17 - 214
Target Start/End: Original strand, 47712544 - 47712741
Alignment:
| Q |
17 |
ccaagtacttctcaaacctctccttatcatgcttcaaaaacttctccttataaaacttcatcgccacagaagcaaccctattgtaaggaatcaaacccca |
116 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||| |||||||| |||||||||||||| ||| |
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| T |
47712544 |
ccaaatacttctcaaacctctttttatcatgcttcaaaaacttctctttataaaactccatcgccacagacgcaaccctgttgtaaggaatcaatttcca |
47712643 |
T |
|
| Q |
117 |
ttgattagcaccaataaacacctcaggcaactccaacaccttcctcaacggcaccaacacatctttcctcaaacgatcacgaaccctataagaataat |
214 |
Q |
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| ||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
47712644 |
tcgattagccccaataaacacctcaggcaactccaaaaccttcctcaatggcaccaacacatccttcctcaaacgatcacgaaccctataagcataat |
47712741 |
T |
|
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