View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9328_low_10 (Length: 333)
Name: NF9328_low_10
Description: NF9328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9328_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 11 - 315
Target Start/End: Original strand, 45269985 - 45270289
Alignment:
| Q |
11 |
gaagcaaaggtagtgaggaacatgaagatcgtgcaaccattcaactgcagacttgggtgcagtcttcggtccagcatcgagccatatactggcggtgtat |
110 |
Q |
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| T |
45269985 |
gaagccaaggtagtgaggaacatgaagatcgtgcaaccattcaactgcagacttgggtgcagtcttcggtccagcatcgagccatatactggcggtgtat |
45270084 |
T |
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| Q |
111 |
ttggtagcctcgctcctgctaatgacacccttataacccttccacttgaccctcctcgcaacattggcaccaggtccagtgttggcatactctgcaaagt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45270085 |
ttggtagcctcgctcctgctaatgacacccttataacccttccacttgaccctcctcgcaacattggcaccaggtccagtgttggcatactctgcaaagt |
45270184 |
T |
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| Q |
211 |
aacacgtgttttcataatgtttttctggcttgtttggttcttctggccaagtggtccatccatcttgatgaatcaaatcaccaattgtggattccatgat |
310 |
Q |
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| T |
45270185 |
aacacgtgttttcatgatgtttttctggcttgttttgttcttctggccaagtggtccatccatcttgatgaataaaatcaccaattgtggattccatgat |
45270284 |
T |
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| Q |
311 |
gactg |
315 |
Q |
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||||| |
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| T |
45270285 |
gactg |
45270289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 11 - 220
Target Start/End: Original strand, 45273547 - 45273744
Alignment:
| Q |
11 |
gaagcaaaggtagtgaggaacatgaagatcgtgcaaccattcaactgcagacttgggtgcagtcttcggtccagcatcgagccatatactggcggtgtat |
110 |
Q |
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| T |
45273547 |
gaagccaaggtagtgaggaacatgaagaccattcaaccattcagctgcagacttgggt------------ccagcttggagccatataccagctgtgaat |
45273634 |
T |
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| Q |
111 |
ttggtagcctcgctcctgctaatgacacccttataacccttccacttgaccctcctcgcaacattggcaccaggtccagtgttggcatactctgcaaagt |
210 |
Q |
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| T |
45273635 |
ttgttagcctcggccctgctaatgacaccgtgataacccttccacttgaccctcctcgcaacattggcaccaggtccggtgtttgcatactctgcatagt |
45273734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 11 - 220
Target Start/End: Original strand, 45281791 - 45281988
Alignment:
| Q |
11 |
gaagcaaaggtagtgaggaacatgaagatcgtgcaaccattcaactgcagacttgggtgcagtcttcggtccagcatcgagccatatactggcggtgtat |
110 |
Q |
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| T |
45281791 |
gaagccaaggtagtgaggaacatgaagaccattcaaccattcagctgcagacttgggt------------ccagcttggagccatataccagctgtgaat |
45281878 |
T |
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| Q |
111 |
ttggtagcctcgctcctgctaatgacacccttataacccttccacttgaccctcctcgcaacattggcaccaggtccagtgttggcatactctgcaaagt |
210 |
Q |
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||| |||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||| |
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| T |
45281879 |
ttgttagcctcggccctgctaatgacaccgtgataacccttccacttgaccctcctcgcaacattggcaccaggtccggtgtttgcatactctgcatagt |
45281978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 78 - 231
Target Start/End: Original strand, 45293186 - 45293339
Alignment:
| Q |
78 |
ggtccagcatcgagccatatactggcggtgtatttggtagcctcgctcctgctaatgacacccttataacccttccacttgaccctcctcgcaacattgg |
177 |
Q |
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|||||||| | |||||||| || || ||| |||||||||||||| |||||||||| |||| | ||||||||||||||||| |||||| |||| ||||| |
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| T |
45293186 |
ggtccagcttggagccataaaccagcagtgaatttggtagcctcggccctgctaatggcaccgtgataacccttccacttgatcctcctggcaatattgg |
45293285 |
T |
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| Q |
178 |
caccaggtccagtgttggcatactctgcaaagtaacacgtgttttcataatgtt |
231 |
Q |
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||||||||||||||||||| ||||||||| ||||||| ||||||||| |||||| |
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| T |
45293286 |
caccaggtccagtgttggcgtactctgcatagtaacatgtgttttcaaaatgtt |
45293339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 78 - 231
Target Start/End: Original strand, 45302146 - 45302299
Alignment:
| Q |
78 |
ggtccagcatcgagccatatactggcggtgtatttggtagcctcgctcctgctaatgacacccttataacccttccacttgaccctcctcgcaacattgg |
177 |
Q |
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|||||||| | |||||||| || || ||| |||||||||||||| |||||||||| |||| | ||||||||||||||||| |||||| |||| ||||| |
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| T |
45302146 |
ggtccagcttggagccataaaccagcagtgaatttggtagcctcggccctgctaatggcaccgtgataacccttccacttgatcctcctggcaatattgg |
45302245 |
T |
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| Q |
178 |
caccaggtccagtgttggcatactctgcaaagtaacacgtgttttcataatgtt |
231 |
Q |
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| T |
45302246 |
caccaggtccagtgttggcgtactctgcatagtaacatgtgttttcaaaatgtt |
45302299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 247 - 309
Target Start/End: Original strand, 45273753 - 45273815
Alignment:
| Q |
247 |
gttcttctggccaagtggtccatccatcttgatgaatcaaatcaccaattgtggattccatga |
309 |
Q |
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| T |
45273753 |
gttctccttgccaaatggtccatccatctggatgaatgaaatcaccaatggtggattccatga |
45273815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 247 - 309
Target Start/End: Original strand, 45281997 - 45282059
Alignment:
| Q |
247 |
gttcttctggccaagtggtccatccatcttgatgaatcaaatcaccaattgtggattccatga |
309 |
Q |
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| T |
45281997 |
gttctccttgccaaatggtccatccatctggatgaatgaaatcaccaatggtggattccatga |
45282059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 256 - 309
Target Start/End: Original strand, 45293346 - 45293399
Alignment:
| Q |
256 |
gccaagtggtccatccatcttgatgaatcaaatcaccaattgtggattccatga |
309 |
Q |
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| T |
45293346 |
gccaaggggtccatccatctggatgaataaaatcaccaatggtggattccatga |
45293399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 256 - 309
Target Start/End: Original strand, 45302306 - 45302359
Alignment:
| Q |
256 |
gccaagtggtccatccatcttgatgaatcaaatcaccaattgtggattccatga |
309 |
Q |
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|||||| ||||||||||||| ||||||| ||||||||||| ||||||||||||| |
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| T |
45302306 |
gccaaggggtccatccatctggatgaataaaatcaccaatggtggattccatga |
45302359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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