View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9328_low_14 (Length: 270)
Name: NF9328_low_14
Description: NF9328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9328_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 138; Significance: 3e-72; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 11 - 215
Target Start/End: Complemental strand, 9031640 - 9031435
Alignment:
| Q |
11 |
cagagatcctttgcaccttattcttgttaacaataactcgatggacatggctcttatattttccattggttaagatctacacaatcaaaaataag-taat |
109 |
Q |
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| T |
9031640 |
cagatatcctttgcaccttgttcttgttaacaataactcgatggacgtggctcttatattttccattggttaagatctacacaatcaaaaataagttatt |
9031541 |
T |
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| Q |
110 |
ctttttagttatattaacaaggaaagaaggatttaatattattcaaaagcccaaagtcatatcagatttgaatgttataaagttagtatttcctgctact |
209 |
Q |
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| T |
9031540 |
ttttttagttggattaacaagagaataaggatttaatattattcaaaagcccaaagttatatcagatttgaatgttctaaagatagtatttcctgctctt |
9031441 |
T |
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| Q |
210 |
acaaca |
215 |
Q |
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|||||| |
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| T |
9031440 |
acaaca |
9031435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 11 - 85
Target Start/End: Complemental strand, 9039050 - 9038976
Alignment:
| Q |
11 |
cagagatcctttgcaccttattcttgttaacaataactcgatggacatggctcttatattttccattggttaaga |
85 |
Q |
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||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9039050 |
cagagatcctttgcaacttgttctttttaacaataactcgatggacatggctcttatattttccattggttaaga |
9038976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 11 - 91
Target Start/End: Complemental strand, 9048488 - 9048408
Alignment:
| Q |
11 |
cagagatcctttgcaccttattcttgttaacaataactcgatggacatggctcttatattttccattggttaagatctaca |
91 |
Q |
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||||||||||||||||||| || ||||||||||| ||||| |||||||| ||||||||||| ||||| ||||| ||||||| |
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| T |
9048488 |
cagagatcctttgcaccttgttgttgttaacaattactcggtggacatgactcttatatttcccattagttaaaatctaca |
9048408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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