View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9328_low_15 (Length: 239)
Name: NF9328_low_15
Description: NF9328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9328_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 9 - 218
Target Start/End: Original strand, 39332610 - 39332819
Alignment:
| Q |
9 |
gtagcatagacatatgaacattaattagtagtgatgatggaggttggaggtactttcaggattagtagttagcaaatagcaaatgattttgaataccctt |
108 |
Q |
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| T |
39332610 |
gtagcataaacatatgaacattaattagtagtgatgatggaggttggaggtactttcaggattagtagttagcaaatagcaaatgattttgaataccctt |
39332709 |
T |
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| Q |
109 |
ttctccaattttgttgttagttactaggactaatgagattttaactggggtatcgtaaaggataaaactttttcctgttattgatggagggtggaggtag |
208 |
Q |
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| T |
39332710 |
ttctccaattttgttgttagttactaggactaatgagattttaactggggtatcgtaaaggataaaactttttcctgttattgatggaggttggaggtag |
39332809 |
T |
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| Q |
209 |
tttcaggatt |
218 |
Q |
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| T |
39332810 |
tttcaggatt |
39332819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 77 - 138
Target Start/End: Original strand, 39343990 - 39344051
Alignment:
| Q |
77 |
ttagcaaatagcaaatgattttgaatacccttttctccaattttgttgttagttactaggac |
138 |
Q |
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| T |
39343990 |
ttagcaaatagctgatgatttttaataccattttctccaaatttgttgttagttactaggac |
39344051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 95 - 142
Target Start/End: Complemental strand, 39552974 - 39552927
Alignment:
| Q |
95 |
ttttgaatacccttttctccaattttgttgttagttactaggactaat |
142 |
Q |
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| T |
39552974 |
ttttgaatacccttttctccaaatttgttgttagtaactcggactaat |
39552927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 77 - 131
Target Start/End: Original strand, 39358099 - 39358153
Alignment:
| Q |
77 |
ttagcaaatagcaaatgattttgaatacccttttctccaattttgttgttagtta |
131 |
Q |
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| T |
39358099 |
ttagcaaatagctaaagatttttaataccattttctccaaatttgttgttagtta |
39358153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 191 - 224
Target Start/End: Complemental strand, 39569747 - 39569714
Alignment:
| Q |
191 |
gatggagggtggaggtagtttcaggattagtagt |
224 |
Q |
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| T |
39569747 |
gatggagggtggaggtagtttcaggattagtagt |
39569714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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