View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9328_low_16 (Length: 227)
Name: NF9328_low_16
Description: NF9328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9328_low_16 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 28836021 - 28836247
Alignment:
| Q |
1 |
taattttaggcacagcaaggggactggcctgtcttcatgaggaattccacatttccattatacatagagatataaagactagcaatatactccttgatga |
100 |
Q |
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| T |
28836021 |
taattttaggaacagcaagagggctggcctgtcttcatgaggaattccacatttccattatacatagagatataaagactagcaatatactccttgatga |
28836120 |
T |
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| Q |
101 |
taatcttcaccccaaaattgctgattttggattggcgcggcttttgccaggggatcgttctcatctaagcactggagttgcaggaacattgtaaggcaaa |
200 |
Q |
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| T |
28836121 |
taatcttcaccccaaaattgctgattttggattggcgcggcttttgccaggggatcgttctcatctaagcactggagttgcaggaacattgtaaggcaaa |
28836220 |
T |
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| Q |
201 |
acaattttattcacttagtttacatca |
227 |
Q |
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| T |
28836221 |
acaattttattcacttagtttacatca |
28836247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 28826571 - 28826795
Alignment:
| Q |
1 |
taattttaggcacagcaaggggactggcctgtcttcatgaggaattccacatttccattatacatagagatataaagactagcaatatactccttgatga |
100 |
Q |
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|||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |
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| T |
28826571 |
taattttaggcacagcaaggggactggcctatctacatgaggaattccacatttccattatacatagagatataaagagtagcaatatcctccttgatga |
28826670 |
T |
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| Q |
101 |
taatcttcaccccaaaattgctgattttggattggcgcggcttttgccaggggatcgttctcatctaagcactggagttgcaggaacattgtaaggcaaa |
200 |
Q |
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| T |
28826671 |
taatcttcatcccaaaattgctgattttggattggcgcggcttttgccaggggatcgatctcatctaagcacaggagttgcaggaacattgtaaggcaaa |
28826770 |
T |
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| Q |
201 |
acaattttattcacttagtttacat |
225 |
Q |
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| T |
28826771 |
acaatttcattcacctagattacat |
28826795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 28820163 - 28820298
Alignment:
| Q |
1 |
taattttaggcacagcaaggggactggcctgtcttcatgaggaattccacatttccattatacatagagatataaagactagcaatatactccttgatga |
100 |
Q |
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||||||||||||||||||| || || ||| ||| ||||| || |||||| ||| ||| |||||||| ||||||||||||| |||||| ||| | ||||| |
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| T |
28820163 |
taattttaggcacagcaagaggtctatcctatctgcatgaagatttccacgtttgcatcatacatagggatataaagactaacaatatcctcttagatga |
28820262 |
T |
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| Q |
101 |
taatcttcaccccaaaattgctgattttggattggc |
136 |
Q |
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| T |
28820263 |
tgatcttcagcctagaattgctgattttggattggc |
28820298 |
T |
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