View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9328_low_2 (Length: 519)
Name: NF9328_low_2
Description: NF9328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9328_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 452; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 13 - 501
Target Start/End: Complemental strand, 56232361 - 56231869
Alignment:
| Q |
13 |
aaagaaaaaggtgaggtgaaagaaagaaagtgaaactacgactaactcgtgtaatttggaaaatactaagttaggaaacaagatatgcagcatgatttat |
112 |
Q |
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||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| || ||||||||| |
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| T |
56232361 |
aaagaaaaaggtgaggtgaaagaaagaaaatgaaactacgaccaactcgtgtaatttggaaaatactaagttaggaaacaaaatatgtagtatgatttat |
56232262 |
T |
|
| Q |
113 |
gacgcaatgtttgaaattaataatgaaagaatag----accttgaggatctctggtgtgattgggttaggccctctagaggagaaagccgccatgcttgg |
208 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56232261 |
gacgcaatgtttgaaattaataatgaaagaataggcaaaccttgaggatctctggtgtgattgggttaggccctctagaggagaaagccgccatgcttgg |
56232162 |
T |
|
| Q |
209 |
agcaggttttatgttcaactttgttgtgggtggatgaatatatcctagtggattcctgttatgtgataataacgacattgattaaaggtaaggtgttaag |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56232161 |
agcaggttttatgttcaactttgttgtgggtggatgaatatatcctagtggattcctgttatgtgataataacgacattgattaaaggtaaggtgttaag |
56232062 |
T |
|
| Q |
309 |
agaacaatgttgaaataattgaattatctatgaagaccaactatacaaatgaagggatgagaaaaggagagagcaacaaaagttacttggttgaattgat |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56232061 |
agaacaatgttgaaataattgaattatctatgaagaccaactatacaaatgaagggatgagaaaaggagagagcaacaaaagttacttggttgaattgat |
56231962 |
T |
|
| Q |
409 |
gtaggcaaagagagcaacgccatctgcataagtaatctgtgttgcaggcaggaaatgaggatcagcaataagctcattgccattagactgatc |
501 |
Q |
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| T |
56231961 |
gtaggcaaagagagcaacgccatctgcataagtaatctgtgttgcaggtaggaaatgaggatcagcaataagctcattgccattagactgatc |
56231869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 65 - 501
Target Start/End: Complemental strand, 39190098 - 39189663
Alignment:
| Q |
65 |
aatttggaaaatactaagttaggaaacaagatatgcagcatgatttatgacgcaatgtttgaaattaataatgaaagaatag----accttgaggatctc |
160 |
Q |
| |
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|||||||||||||| | ||||||||| || ||||| || ||||||| |||| || ||||||||||||||||||||||||||| |||||||||||||| |
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| T |
39190098 |
aatttggaaaataccatgttaggaaataaaatatgtagtatgatttgtgacaca-tgtttgaaattaataatgaaagaataggcaaaccttgaggatctc |
39190000 |
T |
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| Q |
161 |
tggtgtgattgggttaggccctctagaggagaaagccgccatgcttggagcaggttttatgttcaactttgttgtgggtggatgaatatatcctagtgga |
260 |
Q |
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| T |
39189999 |
tggtgtgattgtgttaggccctctagaggagaagaccgccatgcttggagcaggttttattttcaactttgttgtgggtggatgaatatatcctagtgga |
39189900 |
T |
|
| Q |
261 |
ttcctgttatgtgataataacgacattgattaaaggtaaggtgttaagagaacaatgttgaaataattgaattatctatgaagacca--actatacaaat |
358 |
Q |
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| T |
39189899 |
ttcctattatatgataataacgacattaatta-----acggtgttaagagaacaatgttgaattaattgaattatctatgaagaaaaggagggagcaaat |
39189805 |
T |
|
| Q |
359 |
gaagggatgagaaaaggagagagcaacaaaagttacttggttgaattgatgtaggcaaagagagcaacgccatctgcataagtaatctgtgttgcaggca |
458 |
Q |
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| T |
39189804 |
gaagggatgacaaaaggag-gagcaacaaaagttacttggttgaattgatgtaggcaaagacagcaacaccatcttcataaataatatgtgctgtaggta |
39189706 |
T |
|
| Q |
459 |
ggaaatgaggatcagcaataagctcattgccattagactgatc |
501 |
Q |
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| T |
39189705 |
ggaaatgaggatcatcagtaagctcattgccatgagaccgatc |
39189663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 68 - 148
Target Start/End: Complemental strand, 39218836 - 39218756
Alignment:
| Q |
68 |
ttggaaaatactaagttaggaaacaagatatgcagcatgatttatgacgcaatgtttgaaattaataatgaaagaatagac |
148 |
Q |
| |
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| T |
39218836 |
ttggaaaatactatgttaggaaataaaatatgtagtatgatttgtgacacaatgtttgaaattaataatgaaagaatagac |
39218756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 39190172 - 39190138
Alignment:
| Q |
17 |
aaaaaggtgaggtgaaagaaagaaagtgaaactac |
51 |
Q |
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| T |
39190172 |
aaaaaggtgaggtgaaagaaagaaaatgaaactac |
39190138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 208 - 270
Target Start/End: Original strand, 11096751 - 11096813
Alignment:
| Q |
208 |
gagcaggttttatgttcaactttgttgtgggtggatgaatatatcctagtggattcctgttat |
270 |
Q |
| |
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||||||| |||||| |||||||||||| | |||||||||| ||||||||||||||| |||||| |
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| T |
11096751 |
gagcaggctttatgctcaactttgttgagagtggatgaatgtatcctagtggattcttgttat |
11096813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 407 - 480
Target Start/End: Original strand, 43014361 - 43014434
Alignment:
| Q |
407 |
atgtaggcaaagagagcaacgccatctgcataagtaatctgtgttgcaggcaggaaatgaggatcagcaataag |
480 |
Q |
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||||||||||| | |||||| |||||| ||||| ||||||||| ||| | || ||||| ||||||||||||||| |
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| T |
43014361 |
atgtaggcaaacacagcaacaccatcttcataattaatctgtgatgctgacaagaaattaggatcagcaataag |
43014434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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