View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9328_low_27 (Length: 204)

Name: NF9328_low_27
Description: NF9328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9328_low_27
NF9328_low_27
[»] chr4 (3 HSPs)
chr4 (18-193)||(166678-166853)
chr4 (40-192)||(106166-106318)
chr4 (140-193)||(131919-131973)
[»] chr7 (1 HSPs)
chr7 (104-193)||(13055032-13055121)
[»] scaffold0013 (2 HSPs)
scaffold0013 (103-193)||(90220-90310)
scaffold0013 (51-106)||(90398-90453)
[»] chr3 (2 HSPs)
chr3 (122-193)||(12135322-12135393)
chr3 (37-106)||(12135540-12135609)
[»] chr8 (8 HSPs)
chr8 (103-193)||(5652168-5652258)
chr8 (103-156)||(5686961-5687014)
chr8 (52-106)||(5652559-5652613)
chr8 (103-156)||(5665987-5666040)
chr8 (103-156)||(5719077-5719130)
chr8 (114-143)||(5601508-5601537)
chr8 (114-143)||(5639083-5639112)
chr8 (37-97)||(5687147-5687207)


Alignment Details
Target: chr4 (Bit Score: 172; Significance: 1e-92; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 18 - 193
Target Start/End: Original strand, 166678 - 166853
Alignment:
Q  18 aattcagatgtatatacaacttgaaggaaggcggtcaaatgttgtacaaactgcatgggctcttatggctttaattcatggtggtcaggcagagagagac 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  166678 aattcagatgtatatacaacttgaaggaaggcggtcaaatgttgtacaaactgcatgggctcttatggctttaattcatggtggtcaggcagagagagac 166777  T
Q  118 cctactcctcttcatcgtgctgcaaaattgctcatcaattcccagttggaagaaggcaattggcccccacaggttc 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  166778 cctactcctcttcatcgtgctgcaaaattgctcatcaattcccagttggaagaaggcaattggccccaacaggttc 166853  T

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Target: chr4; HSP #2
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 40 - 192
Target Start/End: Original strand, 106166 - 106318
Alignment:
Q  40 gaaggaaggcggtcaaatgttgtacaaactgcatgggctcttatggctttaattcatggtggtcaggcagagagagaccctactcctcttcatcgtgctg 139  Q
    |||||||| || || ||||||||||| ||||||||||||||||||| |||||||||||  || |||||||||||||||||||||||||| ||||||||||    
T  106166 gaaggaagccgatccaatgttgtacatactgcatgggctcttatgggtttaattcatgccggccaggcagagagagaccctactcctctccatcgtgctg 106265  T
Q  140 caaaattgctcatcaattcccagttggaagaaggcaattggcccccacaggtt 192  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| |||||||    
T  106266 caaaattgctcatcaattcccagttggaagaaggcgattggccccaacaggtt 106318  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 193
Target Start/End: Original strand, 131919 - 131973
Alignment:
Q  140 caaaattgctcatcaatt-cccagttggaagaaggcaattggcccccacaggttc 193  Q
    |||||||||||||||||| ||||||||||||||||| ||||| ||| | ||||||    
T  131919 caaaattgctcatcaattccccagttggaagaaggcgattggtcccaaaaggttc 131973  T

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Target: chr7 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 104 - 193
Target Start/End: Original strand, 13055032 - 13055121
Alignment:
Q  104 aggcagagagagaccctactcctcttcatcgtgctgcaaaattgctcatcaattcccagttggaagaaggcaattggcccccacaggttc 193  Q
    ||||||| ||||||| |||||||||||||||| |||||||||| |||||||||||||||||| |||| ||  ||||||||| ||||||||    
T  13055032 aggcagaaagagaccttactcctcttcatcgttctgcaaaatttctcatcaattcccagttgaaagagggtgattggccccaacaggttc 13055121  T

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Target: scaffold0013 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 103 - 193
Target Start/End: Complemental strand, 90310 - 90220
Alignment:
Q  103 caggcagagagagaccctactcctcttcatcgtgctgcaaaattgctcatcaattcccagttggaagaaggcaattggcccccacaggttc 193  Q
    ||||||||||  |||||||||||||| |||||||||||||||||||| || ||||| |||||| || ||||  ||||||||| ||||||||    
T  90310 caggcagagactgaccctactcctctccatcgtgctgcaaaattgcttataaattctcagttgaaacaaggagattggccccaacaggttc 90220  T

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Target: scaffold0013; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 51 - 106
Target Start/End: Complemental strand, 90453 - 90398
Alignment:
Q  51 gtcaaatgttgtacaaactgcatgggctcttatggctttaattcatggtggtcagg 106  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||    
T  90453 gtcaaatgttgtacaaactgcatgggctcttatgggtttaattcatgctggccagg 90398  T

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Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 122 - 193
Target Start/End: Complemental strand, 12135393 - 12135322
Alignment:
Q  122 ctcctcttcatcgtgctgcaaaattgctcatcaattcccagttggaagaaggcaattggcccccacaggttc 193  Q
    |||||||||| |||||||||||||||||||||||||| ||||||||||| ||  ||||||| | ||||||||    
T  12135393 ctcctcttcaccgtgctgcaaaattgctcatcaattctcagttggaagagggtgattggccacaacaggttc 12135322  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 106
Target Start/End: Complemental strand, 12135609 - 12135540
Alignment:
Q  37 cttgaaggaaggcggtcaaatgttgtacaaactgcatgggctcttatggctttaattcatggtggtcagg 106  Q
    |||||||||||  | |||||| ||||||| ||||||||||||||| ||| ||||||||||| ||| ||||    
T  12135609 cttgaaggaagtagatcaaatcttgtacagactgcatgggctcttctgggtttaattcatgctggccagg 12135540  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 103 - 193
Target Start/End: Complemental strand, 5652258 - 5652168
Alignment:
Q  103 caggcagagagagaccctactcctcttcatcgtgctgcaaaattgctcatcaattcccagttggaagaaggcaattggcccccacaggttc 193  Q
    ||||| |||| |||||| ||| ||||||||||||||||||||||  ||||||||||||| || ||||| ||  | ||||||| ||||||||    
T  5652258 caggcggagatagacccaactactcttcatcgtgctgcaaaattaatcatcaattcccaattagaagagggtgactggccccaacaggttc 5652168  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 156
Target Start/End: Complemental strand, 5687014 - 5686961
Alignment:
Q  103 caggcagagagagaccctactcctcttcatcgtgctgcaaaattgctcatcaat 156  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||  ||||||||    
T  5687014 caggcggagagagaccctactcctcttcatcgtgctgtaaaattaatcatcaat 5686961  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 52 - 106
Target Start/End: Complemental strand, 5652613 - 5652559
Alignment:
Q  52 tcaaatgttgtacaaactgcatgggctcttatggctttaattcatggtggtcagg 106  Q
    |||||| |||| |||||||||||||||||||||| ||||||||||| ||| ||||    
T  5652613 tcaaatattgttcaaactgcatgggctcttatgggtttaattcatgctggccagg 5652559  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 156
Target Start/End: Complemental strand, 5666040 - 5665987
Alignment:
Q  103 caggcagagagagaccctactcctcttcatcgtgctgcaaaattgctcatcaat 156  Q
    ||||| ||||||||| ||||||||||||||||||||| ||||||  ||||||||    
T  5666040 caggcggagagagacgctactcctcttcatcgtgctgtaaaattaatcatcaat 5665987  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 156
Target Start/End: Complemental strand, 5719130 - 5719077
Alignment:
Q  103 caggcagagagagaccctactcctcttcatcgtgctgcaaaattgctcatcaat 156  Q
    ||||| ||||||||| ||||||||||||||||||||| ||||||  ||||||||    
T  5719130 caggcggagagagacgctactcctcttcatcgtgctgtaaaattaatcatcaat 5719077  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 114 - 143
Target Start/End: Original strand, 5601508 - 5601537
Alignment:
Q  114 agaccctactcctcttcatcgtgctgcaaa 143  Q
    ||||||||||||||||||||||||||||||    
T  5601508 agaccctactcctcttcatcgtgctgcaaa 5601537  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 114 - 143
Target Start/End: Complemental strand, 5639112 - 5639083
Alignment:
Q  114 agaccctactcctcttcatcgtgctgcaaa 143  Q
    ||||||||||||||||||||||||||||||    
T  5639112 agaccctactcctcttcatcgtgctgcaaa 5639083  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 97
Target Start/End: Complemental strand, 5687207 - 5687147
Alignment:
Q  37 cttgaaggaaggcggtcaaatgttgtacaaactgcatgggctcttatggctttaattcatg 97  Q
    ||||||||||| |  |||||| ||||||| || ||||||||||| |||||||| |||||||    
T  5687207 cttgaaggaagccaatcaaatattgtacagacagcatgggctctaatggctttgattcatg 5687147  T

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