View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9328_low_3 (Length: 507)
Name: NF9328_low_3
Description: NF9328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9328_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 284; Significance: 1e-159; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 17 - 364
Target Start/End: Complemental strand, 31038360 - 31038010
Alignment:
| Q |
17 |
acacaggtggtgctgaaatgtataacaagaagtaatcaatattagcaaaggggaaagcaaaaagtttaaaacaatgcgagaaatggcataccagcgctta |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
31038360 |
acacaggtggtgctgaaatgtataacaagaagtaatcaatattagcaaaggggaaagcaaaaagtttaaaacaatgtgagaaatggcataccagcgctta |
31038261 |
T |
|
| Q |
117 |
cgtcccttacagcaaaaaatagagaaatcaaaatgatcataccataaacaaacttaagaaacttaatcatattttctctct------ctcttaaatgtaa |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
31038260 |
cgtcccttacagcaaaaaatagagaaatcaaaatgatcataccataaacaaacttaagaaacttaatcatattctctctctctctctctcttaaatgtaa |
31038161 |
T |
|
| Q |
211 |
aaaagatatcgnnnnnnnnnntcatttatcagtttatttatattgtcttttatttagaccttatggatagcaataaatcatttggtcttttacatatatt |
310 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31038160 |
aaaagatatcg---aaaaaaatcatttatcagtttatttatattgtcttttatttagactttatggatagcaataaatcatttggtcttttacatatatt |
31038064 |
T |
|
| Q |
311 |
catgtgtcatgtttgtccttttatatggctcaataaacagtctaacataaatcg |
364 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31038063 |
catgtgtcatgtttgtccttttatatggctcaataaacagtctaacataaatcg |
31038010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 416 - 498
Target Start/End: Complemental strand, 31037957 - 31037874
Alignment:
| Q |
416 |
gtacaatttcttttataac-ttttcatgatagattgaggaaacccaaacacaacaatataacagtattagccaataagaataat |
498 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
31037957 |
gtacaatgtcttttataaaattttcatgatagattgaggaaacccaaacacaacaatataacagtattagccaataagattaat |
31037874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 103 - 191
Target Start/End: Complemental strand, 31028015 - 31027927
Alignment:
| Q |
103 |
cataccagcgcttacgtcccttacagcaaaaaatagagaaatcaaaatgatcataccataaacaaacttaagaaacttaatcatatttt |
191 |
Q |
| |
|
|||||||| |||| | ||||||||| ||||||||| |||||||| |||||| || |||||| ||| || ||||||||||||||||||| |
|
|
| T |
31028015 |
cataccagagctttcatcccttacaacaaaaaatatggaaatcaagatgatcgtagcataaaaaaatttgagaaacttaatcatatttt |
31027927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 280 - 362
Target Start/End: Complemental strand, 31027847 - 31027765
Alignment:
| Q |
280 |
gcaataaatcatttggtcttttacatatattcatgtgtcatgtttgtccttttatatggctcaataaacagtctaacataaat |
362 |
Q |
| |
|
|||| |||| |||| |||||||||||| |||||| |||||||||||||| || |||| ||||||||| | |||||||||||| |
|
|
| T |
31027847 |
gcaagaaatgattttgtcttttacatacattcatttgtcatgtttgtcccttaatatcactcaataaaaaatctaacataaat |
31027765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 96 - 173
Target Start/End: Original strand, 27560559 - 27560636
Alignment:
| Q |
96 |
gaaatggcataccagcgcttacgtcccttacagcaaaaaatagagaaatcaaaatgatcataccataaacaaacttaa |
173 |
Q |
| |
|
|||| ||| |||||||| |||| || |||||| ||||||||| | |||| || ||||||||| ||||||||||||||| |
|
|
| T |
27560559 |
gaaaaggcttaccagcgattacatcacttacatcaaaaaatacaaaaataaatatgatcatagcataaacaaacttaa |
27560636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 133 - 190
Target Start/End: Complemental strand, 4656029 - 4655972
Alignment:
| Q |
133 |
aaatagagaaatcaaaatgatcataccataaacaaacttaagaaacttaatcatattt |
190 |
Q |
| |
|
|||||||||||| ||||||| |||| |||||||||||||| ||||||| |||||||| |
|
|
| T |
4656029 |
aaatagagaaattaaaatgaacatagtataaacaaacttaaaaaacttagtcatattt |
4655972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 190
Target Start/End: Complemental strand, 4647584 - 4647527
Alignment:
| Q |
133 |
aaatagagaaatcaaaatgatcataccataaacaaacttaagaaacttaatcatattt |
190 |
Q |
| |
|
|||||||||||| ||||||| |||| |||||||||||||| |||||| |||||||| |
|
|
| T |
4647584 |
aaatagagaaattaaaatgaacatagtataaacaaacttaaaaaacttggtcatattt |
4647527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University