View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9328_low_5 (Length: 417)
Name: NF9328_low_5
Description: NF9328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9328_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 131 - 408
Target Start/End: Original strand, 36602121 - 36602398
Alignment:
| Q |
131 |
aatatgtgtgcgagggttgtaaaccctcgagtattgagtttcattccatttgatataaaaacaaaataagttcaaaagtgattgtcatcatgagagagtt |
230 |
Q |
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| T |
36602121 |
aatatgtgtgcgagggttgtaaaccctcgagtattgagtttgattccatttgatatgaaaacaaaataagtttaaaagtgattgtcatcatgagagagtt |
36602220 |
T |
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| Q |
231 |
caaagtatctacaaaccatgaagaacatatcctaaacttcccagtgtagacaattcgaagacaagatgcatttctccctctacacaacatccaacaagct |
330 |
Q |
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| T |
36602221 |
caaagtatctacaaaccatgaagaacgtatcctaaacttcccagtgtagacaattcgaagacaagatgcatttctccctctacacaacatccaacaagct |
36602320 |
T |
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| Q |
331 |
ttgcagtattaggatgatcaacatgagcaataactcctaactcagatagaaagccagctgtcttttcatctgtgctcc |
408 |
Q |
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| T |
36602321 |
ttgcggtattaggatgatcaacatgagcaataactcctaactcagatagaaagccagctgtcttttcatctgtgctcc |
36602398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 12 - 130
Target Start/End: Original strand, 36601968 - 36602086
Alignment:
| Q |
12 |
catcagcaattccaagagcaactttataccttttactccaatccaatttggttttatctgaacctgaaatacatcatgagggaataagctataagtacat |
111 |
Q |
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| T |
36601968 |
catcagcaattccgagagcaactttataccttttactccaatccaatttggttttatctgaacctgaaatacatcatgagggaataagctataagtacat |
36602067 |
T |
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| Q |
112 |
ttaaagttgaaagcatgtt |
130 |
Q |
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| T |
36602068 |
ttaaagttgaaagtatgtt |
36602086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 383
Target Start/End: Complemental strand, 47014181 - 47014089
Alignment:
| Q |
291 |
acaagatgcatttctccctctacacaacatccaacaagctttgcagtattaggatgatcaacatgagcaataactcctaactcagatagaaag |
383 |
Q |
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||||| ||||||||||| ||||||| |||||||| ||| | ||||| |||||||| | | ||||||||||| |||| ||||||||||||| |
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| T |
47014181 |
acaaggtgcatttctccttctacaccacatccaataagtctggcagtgttaggatggtttagatgagcaataatgcctagctcagatagaaag |
47014089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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