View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9328_low_6 (Length: 392)
Name: NF9328_low_6
Description: NF9328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9328_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 23 - 357
Target Start/End: Complemental strand, 34698314 - 34697980
Alignment:
| Q |
23 |
atgggtggttttattagggacttgaaggaagagtttaagagtgttgagaatgtttatgtttggcatgcactttgtgggtattggggtggggttagaccta |
122 |
Q |
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| T |
34698314 |
atgggtggttttattagggacttgaaggaagagtttaagagtgttgagaatgtttatgtttggcatgcactttgtgggtattggggtggggttagaccta |
34698215 |
T |
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| Q |
123 |
aagtgaagggcatgcccgaagctaaggttgttactccgaagctgtctccggggctgaagatgacaatggaggatttagcggtggataagattgttaacaa |
222 |
Q |
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| T |
34698214 |
aagtgaagggcatgcccgaagctaaggttgttactccgaagctgtctccggggctgaagatgacaatggaggatttagcggtggataagattgttaacaa |
34698115 |
T |
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| Q |
223 |
tggtgtaggcttagtgccaccaaatttagcccaagaaatgtttgaagggcttcactctcatttggaatcggtgggcattgacggtgttaaagttgacgtt |
322 |
Q |
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| T |
34698114 |
tggtgtagggttagtgccaccaaatttagcccaagaaatgtttgaagggcttcactctcatttggaatcggtgggcattgacggtgttaaagttgacgtt |
34698015 |
T |
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| Q |
323 |
attcatgtaagtcttctaaaattctctcttgtctt |
357 |
Q |
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| T |
34698014 |
attcatgtaagtcttctaaaattctctcttgtctt |
34697980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 43563921 - 43563873
Alignment:
| Q |
72 |
atgtttatgtttggcatgcactttgtgggtattggggtggggttagacc |
120 |
Q |
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| T |
43563921 |
atgtttatgtttggcatgcactttgtggttattggggtggtgtgagacc |
43563873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 121
Target Start/End: Complemental strand, 36431900 - 36431851
Alignment:
| Q |
72 |
atgtttatgtttggcatgcactttgtgggtattggggtggggttagacct |
121 |
Q |
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| T |
36431900 |
atgtttatgtttggcatgcactttgtggtgcttggggtggtgtgagacct |
36431851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 123
Target Start/End: Complemental strand, 43639596 - 43639547
Alignment:
| Q |
74 |
gtttatgtttggcatgcactttgtgggtattggggtggggttagacctaa |
123 |
Q |
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| T |
43639596 |
gtttatgtgtggcatgctttttgtgggtattggggtgggattaggcctaa |
43639547 |
T |
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