View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9328_low_7 (Length: 389)
Name: NF9328_low_7
Description: NF9328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9328_low_7 |
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| [»] scaffold0450 (1 HSPs) |
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Alignment Details
Target: scaffold0450 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: scaffold0450
Description:
Target: scaffold0450; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 1 - 354
Target Start/End: Original strand, 10367 - 10717
Alignment:
| Q |
1 |
attatcgaaaagattttattatcgaaaaggaattttattaaaagtatttgacctaaatttgttcacttcaccagttacataaagatggagataatattga |
100 |
Q |
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| T |
10367 |
attatcgaaaagatgttattatcgaaaaggaattttattaaaactatttgacctaaatttgttcacttcaccagttacataaagatggagataatatcga |
10466 |
T |
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| Q |
101 |
tcctcaagctggaatctcatcctctgtgttgaatgagtcaccaataagatcgaatcaaaaccctaatcaggcaagtctcattggtcatcataatctttat |
200 |
Q |
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| T |
10467 |
tcctcaagctggaatttcatcctctgtgttgaatgagtcaccaataagttcgaatcaaaaccctaatcaggcaagtctcattggtcatcatactctttat |
10566 |
T |
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| Q |
201 |
ttaaatcacatatttattttgttttattattcaaatgattgacaaaatctcatactgatcaggcaagtatattatcagctactgatcaggcaactacatc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||| |
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| T |
10567 |
ttaaatcacatatttattttgttttattattcaaataattgacaaaatttcatactgatcaggcaagta---tatcagctactgatcaggcaagtacatc |
10663 |
T |
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| Q |
301 |
agctactaatcaggcaagtaaacttgttaaaataaatgtttgtttattgcaatt |
354 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10664 |
agctaataatcaggcaagtaaacttgttaaaataaatgtttgtttattgcaatt |
10717 |
T |
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