View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9329_1 (Length: 811)
Name: NF9329_1
Description: NF9329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9329_1 |
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Alignment Details
Target: chr3 (Bit Score: 708; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 708; E-Value: 0
Query Start/End: Original strand, 28 - 782
Target Start/End: Original strand, 46108985 - 46109740
Alignment:
| Q |
28 |
tttagctgattgccgtgaggtttttgctaaaa-aacctcaagtggagcagcagacggtcgttttgaaagccataagtcctggaaagcaaacttgcaaggt |
126 |
Q |
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| T |
46108985 |
tttagctgattgccgtgaggtttttgctaaaaaaacctcaagtggagcagcagacggtcgttttgaaagccataagtcctggaaaacaaactcgcaaggt |
46109084 |
T |
|
| Q |
127 |
aaatgtcgaccatgaaatgcaagcagagttagtcaaatgatagagtgctttgaccataaagggaaactttaccacagccctatagctctagaacctatgg |
226 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
46109085 |
aaatgtcgaccatgaaatgcaagcagagttagtcaaatgatagagtgctttaaccataaagggaaactttaccacagccctatagctctaaaacctatgg |
46109184 |
T |
|
| Q |
227 |
tgtatggggctgaatgttgatggtaaaaagcctttaaaaactaagtttaatgttttaatgagtagccacacaacatgagattggattagtaatgaatgaa |
326 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
46109185 |
tgtatggggctgaatgttgatggtaaaaagcctttaaaaactaagtttaatgttttaatgagtagccacacaacatgagattggattaggaatgaatgaa |
46109284 |
T |
|
| Q |
327 |
tgcgttagacaaaaagatgggtggcaccttttgtgaaaaaatggcggaatctctctttatttgatttggtcctgtgtgctagaggtcaaaccattgagaa |
426 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46109285 |
tgcgttagacaaaaagatgggtggcaccttttgtgaaaaaatggcggaatctctctttatttgatttggtcctgtgtgctagaggtcaaaccattgagaa |
46109384 |
T |
|
| Q |
427 |
gactatagattggtttgtctctagacaagtgttttcaaatagtggttatagcggcgctagaatttgaacaaaccgctattgttttgcaatacgcttcaaa |
526 |
Q |
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| T |
46109385 |
gactatagattggtttgtctctagacaagtgttttcaaatagtggttatagcggcgctagaatttgaacaaactgctattgttttgcaatacgcttcaaa |
46109484 |
T |
|
| Q |
527 |
gtgttttcaaacagttagctataacactgtagaatgtcagaatttgaacaaactgctatttactatgatccgtggtcgacaacattgctctatacacagt |
626 |
Q |
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| T |
46109485 |
gtgttgtcaaacagttagctatagcactgtagaatgtcagaatttgaacaaactgctatttactatgatccgtggtcgacaacattgctctatacacagt |
46109584 |
T |
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| Q |
627 |
ttacgagaagacatttttgtttgatcctagtaggaaaatgctttattgttgttgcacttgtcatttatcaacttaccatatcttactaacggttatcctg |
726 |
Q |
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| T |
46109585 |
ttacgagaagacatttttgtttgatcctagtaggaaaatgctttattgttgttgcacttgtcatttatcaacttaccatatcttactaacggttctcctg |
46109684 |
T |
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| Q |
727 |
tatgctgaaagcttcacatgatgaggagtcccacagtgttacagtaaactaataca |
782 |
Q |
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| T |
46109685 |
tatgctgaaagcttcacatgatgaggagtccgacagtgttacagtaaactaataca |
46109740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 652 - 719
Target Start/End: Original strand, 46099846 - 46099919
Alignment:
| Q |
652 |
cctagtaggaaaatgctttattgttgttg------cacttgtcatttatcaacttaccatatcttactaacggt |
719 |
Q |
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| T |
46099846 |
cctagtaggaaattgctttattgttgttgttgtttcacttgttgtttatcaatttaccatatcttactaacggt |
46099919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 237 - 320
Target Start/End: Original strand, 46099523 - 46099608
Alignment:
| Q |
237 |
tgaatgttgatggtaaaaagccttt--aaaaactaagtttaatgttttaatgagtagccacacaacatgagattggattagtaatg |
320 |
Q |
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| T |
46099523 |
tgaatgttgatggtaaagaacctttaaaaaaaataaggttaatgttttaatgggcggctgcacaacatgagatgggattagaaatg |
46099608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 456 - 485
Target Start/End: Complemental strand, 48517458 - 48517429
Alignment:
| Q |
456 |
tgttttcaaatagtggttatagcggcgcta |
485 |
Q |
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| T |
48517458 |
tgttttcaaatagtggttatagcggcgcta |
48517429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 486 - 519
Target Start/End: Complemental strand, 4248365 - 4248332
Alignment:
| Q |
486 |
gaatttgaacaaaccgctattgttttgcaatacg |
519 |
Q |
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| T |
4248365 |
gaattttaacaaaccgctattgttttgcaatacg |
4248332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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