View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9329_4 (Length: 301)
Name: NF9329_4
Description: NF9329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9329_4 |
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Alignment Details
Target: chr3 (Bit Score: 166; Significance: 7e-89; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 29 - 206
Target Start/End: Original strand, 798121 - 798298
Alignment:
| Q |
29 |
agagagtacataaatactctgctacaatataccatgagttgccatttagttaatttcttgccaagcatctgactatcgactaattgaacacaattaaagc |
128 |
Q |
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| T |
798121 |
agagagtacataaatactctgctacaatataccacgagttgccatttagttaatttcttgccaagcatctgactatcgactaattgaacacaattaaagc |
798220 |
T |
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| Q |
129 |
atctgactttctagtgttttgcctcgtgtaaacagtagtcaaacaactataccaacaataagtgtccaattgtgttat |
206 |
Q |
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| T |
798221 |
atctgactttctggtgttttgccacgtgtaaacagtagtcaaacaactataccaacaataagtgtccaattgtgttat |
798298 |
T |
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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 187
Target Start/End: Complemental strand, 14527454 - 14527408
Alignment:
| Q |
141 |
agtgttttgcctcgtgtaaacagtagtcaaacaactataccaacaat |
187 |
Q |
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|||||||||| |||| || |||||| ||||||||||||||||||||| |
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| T |
14527454 |
agtgttttgcatcgtatacacagtaatcaaacaactataccaacaat |
14527408 |
T |
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