View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9329_low_2 (Length: 337)
Name: NF9329_low_2
Description: NF9329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9329_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 10 - 319
Target Start/End: Original strand, 15555816 - 15556125
Alignment:
| Q |
10 |
aagcaaaggagcaaattcaaaagagttttaatggtgtcaaaaagaggtatctttgtttggtttaattttatttagttattatctgtgtcttctggtctaa |
109 |
Q |
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| T |
15555816 |
aagcaaaggagcaaattcaaaagagttttaatggtgtcaaaaagaggtatctttgtttggtttaattttatttagttattatctgtgtgttctggtctaa |
15555915 |
T |
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| Q |
110 |
ttccataagttaaacttacttaattctttttactttgtagttacaaacctgtttggaacatcattgatgatagatgggatagaatgttacataggccttt |
209 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15555916 |
ttccagaagttaaacttacttaattctttttactttgtagttacaaacctgtttggaacatcattgatgatagatgggatagaatgttacataggccttt |
15556015 |
T |
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| Q |
210 |
gcatgctgcagcctattatcttaacccacaacttcattaccgtcctgaatttaaagctgatattgaggtgagaaaaggcttaatggattgtataactagg |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15556016 |
gcatgctgcagcctattatcttaacccacaacttcattaccgtcctggatttaaagctgatattgaggtgagaaaaggcttaatggattgtataactagg |
15556115 |
T |
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| Q |
310 |
atggtggaag |
319 |
Q |
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|||||||||| |
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| T |
15556116 |
atggtggaag |
15556125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 133; Significance: 4e-69; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 10 - 248
Target Start/End: Complemental strand, 8989172 - 8988942
Alignment:
| Q |
10 |
aagcaaaggagcaaattcaaaagagttttaatggtgtcaaaaagaggtatctttgtttggtttaattttatttagttattatctgtgtcttctggtctaa |
109 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||| |||||||||| |
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| T |
8989172 |
aagcaaaggagcaaattcaaaagaattttaatggtgtcaaaaggagacatctttgtttggtttaattttatttagttata-----tgtgatctggtctaa |
8989078 |
T |
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| Q |
110 |
ttccataagttaaacttacttaattctttttactttgtagttacaaacctgtttggaacatcattgatgatagatgggatagaatgttacataggccttt |
209 |
Q |
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||||| |||||||| |||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||| || ||||||||||| |
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| T |
8989077 |
ttccaaaagttaaa---acttaattatttttactttgtagttacaaacctattttgaacatcattgatgatagatgggataaaatatttcataggccttt |
8988981 |
T |
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| Q |
210 |
gcatgctgcagcctattatcttaacccacaacttcatta |
248 |
Q |
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||||| |||||| |||||||||||||| ||||| ||||| |
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| T |
8988980 |
gcatgttgcagcttattatcttaacccgcaactacatta |
8988942 |
T |
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