View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9329_low_3 (Length: 229)
Name: NF9329_low_3
Description: NF9329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9329_low_3 |
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| [»] scaffold0006 (1 HSPs) |
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| [»] scaffold1130 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 2 - 198
Target Start/End: Complemental strand, 4533371 - 4533177
Alignment:
| Q |
2 |
ttgacaagctttgaataatacataaagtttattaatttgcataagttgttttatgtaagctcaatagaatcgggccctagtagtgtttaaggttttgtat |
101 |
Q |
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| T |
4533371 |
ttgacaagatttgaataatacataaagtttattaatttgcataagttgttttacgtaagctcaatagaatcgggcc---ttagtgtttaaggttttgtat |
4533275 |
T |
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| Q |
102 |
tgtaaaataaaattagttgatatgctaatcgataaccaatagac-nnnnnnnnncttttcaatggagattctattttattttattgtttcaggatatg |
198 |
Q |
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| T |
4533274 |
tgtaaaataaaattagttgatatgctaatcgataaccaatagacttttttttttcttttcaatggagattctattttattttattgtttcaggatatg |
4533177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 2757120 - 2757168
Alignment:
| Q |
15 |
aataatacataaagtttattaatttgcataagttgttttatgtaagctc |
63 |
Q |
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| T |
2757120 |
aataatacataaaacttatttatttgcataagctgttttatataagctc |
2757168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 40629452 - 40629505
Alignment:
| Q |
1 |
cttgacaagctt-tgaataatacataaagtttattaatttgcataagttgtttt |
53 |
Q |
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| T |
40629452 |
cttgacaagcttatgaataatacataaagtttatttatttggataagctgtttt |
40629505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 41037803 - 41037757
Alignment:
| Q |
1 |
cttgacaagctttgaataatacat-aaagtttattaatttgcataag |
46 |
Q |
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| T |
41037803 |
cttgacaagctttgaataatacataaaagcttatttatttgcataag |
41037757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 40727 - 40767
Alignment:
| Q |
15 |
aataatacataaagtttattaatttgcataagttgttttat |
55 |
Q |
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| T |
40727 |
aataatacataaaatttatttatttgcataagttgttttat |
40767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 1473407 - 1473341
Alignment:
| Q |
1 |
cttgacaagctt-tgaataatacataaa-gtttattaatttgcataagttgttttatgtaagctcaa |
65 |
Q |
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|||||||||||| ||||||||||||||| | ||||| |||||||||||||||| | | ||||||||| |
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| T |
1473407 |
cttgacaagcttatgaataatacataaaagcttatttatttgcataagttgttctgtataagctcaa |
1473341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 6008329 - 6008370
Alignment:
| Q |
15 |
aataatacataaa-gtttattaatttgcataagttgttttat |
55 |
Q |
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| T |
6008329 |
aataatacataaaagtttatttatttgcataagttgttttat |
6008370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 19327905 - 19327864
Alignment:
| Q |
13 |
tgaataatacataaa-gtttattaatttgcataagttgtttt |
53 |
Q |
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| T |
19327905 |
tgaataatacataaaagtttatttatttgcataagttgtttt |
19327864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1130 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1130
Description:
Target: scaffold1130; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 2284 - 2244
Alignment:
| Q |
15 |
aataatacataaagtttattaatttgcataagttgttttat |
55 |
Q |
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|||||||||| || |||||| |||||||||||||||||||| |
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| T |
2284 |
aataatacattaaatttatttatttgcataagttgttttat |
2244 |
T |
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