View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9329_low_6 (Length: 220)
Name: NF9329_low_6
Description: NF9329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9329_low_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 3724148 - 3724348
Alignment:
| Q |
1 |
tgatatgtcattcttttaagatcaagtgttctgccgtaccctttgctggttcaatggaaaattatccttgtgttctgcttgtgctttgattcaaatgttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
3724148 |
tgatatgtcattcttttaagatcaagtgttctgccgtaccctttgctggttcaatggaaaattatccttgtgttctgcttgtgctttgattcgaatgttg |
3724247 |
T |
|
| Q |
101 |
aaatttgcaagatgctgatacaaaactaaatccaatcgatacgaatctcttctatgtgtgtattttgaacatgaatcatatcttgagacccgattcgtta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
3724248 |
aaatttgcaagatgctgatacaaaactaaatccaatcgatacgaatctcttctatgtatctattttgaacacgaatcatatcttgagacccgattcgtta |
3724347 |
T |
|
| Q |
201 |
c |
201 |
Q |
| |
|
| |
|
|
| T |
3724348 |
c |
3724348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 196
Target Start/End: Complemental strand, 10582412 - 10582333
Alignment:
| Q |
117 |
gatacaaaactaaatccaatcgatacgaatctcttctatgtgtgtattttgaacatgaatcatatcttgagacccgattc |
196 |
Q |
| |
|
|||||||||||| ||| |||||||| |||||||| | ||| | ||||||||||||||||| |||||||| || ||||| |
|
|
| T |
10582412 |
gatacaaaactatatcaaatcgatatgaatctctagtgtgtatctattttgaacatgaatctcatcttgagtcctgattc |
10582333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 195
Target Start/End: Complemental strand, 12229652 - 12229574
Alignment:
| Q |
117 |
gatacaaaactaaatccaatcgatacgaatctcttctatgtgtgtattttgaacatgaatcatatcttgagacccgatt |
195 |
Q |
| |
|
|||||||||||||||| ||| |||||||| | || ||||| | ||||||||||||||||| |||||| | ||||||| |
|
|
| T |
12229652 |
gatacaaaactaaatctaattgatacgaaccactaatatgtatctattttgaacatgaatctcatcttgtgccccgatt |
12229574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University