View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9330_high_29 (Length: 224)

Name: NF9330_high_29
Description: NF9330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9330_high_29
NF9330_high_29
[»] chr2 (1 HSPs)
chr2 (19-101)||(5560650-5560732)
[»] chr4 (1 HSPs)
chr4 (19-105)||(32988184-32988269)
[»] scaffold0636 (1 HSPs)
scaffold0636 (24-105)||(1599-1680)
[»] chr7 (1 HSPs)
chr7 (31-105)||(49095851-49095925)
[»] chr8 (1 HSPs)
chr8 (24-104)||(40337639-40337719)
[»] chr5 (1 HSPs)
chr5 (25-75)||(27872600-27872650)


Alignment Details
Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 19 - 101
Target Start/End: Complemental strand, 5560732 - 5560650
Alignment:
Q  19 gagttattggttgaaccgcataaaagaatcggatgactcagtcatttcactcggtctgatctttgtattaaacaagttgactc 101  Q
    ||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  5560732 gagttattggtcgaaccgcatgaaagaatcggatgactcggtcatttcactcggtctgatctttgtattaaacaagttgactc 5560650  T

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Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 32988269 - 32988184
Alignment:
Q  19 gagttattggttgaaccgcataaaagaatcggatgactcagtcatttcactcggtctgatctttgtattaaacaagttgactcggtc 105  Q
    |||| |||||| ||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||    
T  32988269 gagtcattggtcgaaccgcatgaaagaatcggatgactc-gtcatttcactcggtctaatctttgtattaaacaagttgactcggtc 32988184  T

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Target: scaffold0636 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: scaffold0636
Description:

Target: scaffold0636; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 24 - 105
Target Start/End: Original strand, 1599 - 1680
Alignment:
Q  24 attggttgaaccgcataaaagaatcggatgactcagtcatttcactcggtctgatctttgtattaaacaagttgactcggtc 105  Q
    |||||| ||||||||| ||||||||||||||||| |||||||||||||||||  ||||||||||||||||||||||||||||    
T  1599 attggtcgaaccgcatgaaagaatcggatgactcggtcatttcactcggtctattctttgtattaaacaagttgactcggtc 1680  T

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Target: chr7 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 31 - 105
Target Start/End: Original strand, 49095851 - 49095925
Alignment:
Q  31 gaaccgcataaaagaatcggatgactcagtcatttcactcggtctgatctttgtattaaacaagttgactcggtc 105  Q
    ||||||||| |||||||||||||||||  |||||||||||| ||| |||||||||||||||||||||||||||||    
T  49095851 gaaccgcatgaaagaatcggatgactcgatcatttcactcgatctaatctttgtattaaacaagttgactcggtc 49095925  T

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Target: chr8 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 40337639 - 40337719
Alignment:
Q  24 attggttgaaccgcataaaagaatcggatgactcagtcatttcactcggtctgatctttgtattaaacaagttgactcggt 104  Q
    |||||| ||||||||| ||||  ||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||    
T  40337639 attggtcgaaccgcatgaaaggttcggatgactctgtcatttcactcagcctgatctttgtattaaacaagttgactcggt 40337719  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 27872600 - 27872650
Alignment:
Q  25 ttggttgaaccgcataaaagaatcggatgactcagtcatttcactcggtct 75  Q
    |||||||||| ||||||||||||| |||||||  || ||||||||||||||    
T  27872600 ttggttgaactgcataaaagaatcagatgacttggttatttcactcggtct 27872650  T

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