View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9330_high_3 (Length: 596)
Name: NF9330_high_3
Description: NF9330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9330_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 541; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 1 - 577
Target Start/End: Complemental strand, 8169974 - 8169398
Alignment:
| Q |
1 |
agatcaatcattctaaccattcacttttggtatataaataccaaaatatcttagccatcatcaacatattttggtcatggcaatagatcatgagtcaagg |
100 |
Q |
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| T |
8169974 |
agatcaatcattctaaccattcacttttggtatataaataccaaaatatcttagccatcatcaacatattttggtcatggcaatagatcatgagtcaagg |
8169875 |
T |
|
| Q |
101 |
attactctccggccattcaaagaaagtgatgctgacgatgtgttattgtgggcaagtgatgaaagagtcatgcaatatatgcgattggagttatgtaaat |
200 |
Q |
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| T |
8169874 |
attactctccggccattcaaagaaagtgatgctgacgatgtgttattgtgggcaagtgatgaaagagtcatgcaatatatgcgattggagttatgtaaat |
8169775 |
T |
|
| Q |
201 |
caagggaacaagctttgaatttcataaaaaatgattgcatttacccattccaacaatcaatatgtcttaatgatcactctattggaattgtttttgtcct |
300 |
Q |
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| T |
8169774 |
caagggaacaagcttcgaatttcataaaaaatgattgcatttacccattccaacaatcaatatgtcttaatgatcactctattggaattgtttttgtcct |
8169675 |
T |
|
| Q |
301 |
tccttatcctgatgcaaagtttaaagcagatttaggttatgctattgggttcaactattggggccaaggtgtagctagcaaagcagtgaagattcttttg |
400 |
Q |
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| T |
8169674 |
tccttatcctgatgcaaagtttaaagcagatttaggttatgctattgggtttaactattggggccaaggtgtagccaccaaagcagtgaagattcttttg |
8169575 |
T |
|
| Q |
401 |
tcttgtgtattccaagactttcctgatttggtaaggttgcaagctaatactcgtccagacaacatagcttctcaaaaactgttggaaaaggtaggtttcc |
500 |
Q |
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| T |
8169574 |
tcttgtgtattccaagactttcctgatttggtaaggttgcaggctaatactcgtccagacaacatagcttctcaaagactgttggaaaaggttggtttcc |
8169475 |
T |
|
| Q |
501 |
aaagggagggattgttcagaaagggtatttataacaaagggaatgtagaagatttctgtatttttagtttcctgtct |
577 |
Q |
| |
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| T |
8169474 |
aaagggagggattgttcagaaagggtatttataacaaagggaatgtagaggatttctgtatttttagtttcttgtct |
8169398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 12 - 544
Target Start/End: Complemental strand, 8172593 - 8172062
Alignment:
| Q |
12 |
tctaaccattcacttttggtatataaataccaaaatatcttagccatcatcaacatattttggtcatggcaatagatcatgagtcaaggattactctccg |
111 |
Q |
| |
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| T |
8172593 |
tctaaccacacacttttggtgtataaataccaaaatatcttagccat-attaacatattgtggtcatggcaatagatcatgagtcaaggatcactctccg |
8172495 |
T |
|
| Q |
112 |
gccattcaaagaaagtgatgctgacgatgtgttattgtgggcaagtgatgaaagagtcatgcaatatatgcgattggagttatgtaaatcaagggaacaa |
211 |
Q |
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| T |
8172494 |
gccattcaaagaaagtgatgctgacgatgtgttattgtgggcaagtgatgaaagagtcatgcaatatacacgattgaagttatgtaaatcaagggaacaa |
8172395 |
T |
|
| Q |
212 |
gctttgaatttcataaaaaatgattgcatttacccattccaacaatcaatatgtcttaatgatcactctattggaattgtttttgtccttccttatcctg |
311 |
Q |
| |
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| T |
8172394 |
gctttgaatttcataaagaaagattgtatttacccattccaacaatcaatatgtcttgatgatcactctattggaattgtttttgttcttccaatttctt |
8172295 |
T |
|
| Q |
312 |
atgcaaagtttaaagcagatttaggttatgctattgggttcaactattggggccaaggtgtagctagcaaagcagtgaagattcttttgtcttgtgtatt |
411 |
Q |
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||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||| |||| | |||||| | ||||||||||||||| | || || |
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| T |
8172294 |
atgcaaagtttaaagcagatttaggttttgctattggattcaattattggggccaaggtatagccacaaaagcacttaagattcttttgtctcgagtgtt |
8172195 |
T |
|
| Q |
412 |
ccaagactttcctgatttggtaaggttgcaagctaatactcgtccagacaacatagcttctcaaaaactgttggaaaaggtaggtttccaaagggaggga |
511 |
Q |
| |
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|||||| |||||||| ||| ||||||||| ||||||| || | ||||||||| ||||| |||| |||||||||| || || ||||| ||||||||| |
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| T |
8172194 |
ccaagagtttcctgacttgcaaaggttgcaggctaatattcttgtagacaacatggcttcacaaagggtgttggaaaaagttggcttccatagggaggga |
8172095 |
T |
|
| Q |
512 |
ttgttcagaaagggtatttataacaaagggaat |
544 |
Q |
| |
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||||||||||||| | || || ||||||||||| |
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| T |
8172094 |
ttgttcagaaaggtttttcatcacaaagggaat |
8172062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 210 - 501
Target Start/End: Complemental strand, 8177352 - 8177058
Alignment:
| Q |
210 |
aagctttgaatttcataaaaaatgattgcatttacccattccaacaatcaatatgtcttaatgatcactctattggaattgtttttgtccttccttatcc |
309 |
Q |
| |
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|||||||| |||||||||||||||| |||||||||||| ||| ||||||||||||||| |||| ||||| |||||||| |||| | |||||| || | |
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| T |
8177352 |
aagctttggatttcataaaaaatgaatgcatttacccaatccgccaatcaatatgtcttgatgaccactccattggaatggtttggattcttcctcatgc |
8177253 |
T |
|
| Q |
310 |
---tgatgcaaagtttaaagcagatttaggttatgctattgggttcaactattggggccaaggtgtagctagcaaagcagtgaagattcttttgtcttgt |
406 |
Q |
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| T |
8177252 |
taatgatgagaaatataaagcagatatgggttatgctattggattcaactattggggtcaagggattgccactaatgcagtgaagattcttctgtcaaaa |
8177153 |
T |
|
| Q |
407 |
gtattccaagactttcctgatttggtaaggttgcaagctaatactcgtccagacaacatagcttctcaaaaactgttggaaaaggtaggtttcca |
501 |
Q |
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| T |
8177152 |
gtgttccatgagttcccagatttgagaaggttgcaagcttatactgttctacagaacatagcttctcagagggtgttggaaaaggtagggttcca |
8177058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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