View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9330_low_11 (Length: 544)
Name: NF9330_low_11
Description: NF9330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9330_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 429; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 5 - 527
Target Start/End: Original strand, 36791517 - 36792040
Alignment:
| Q |
5 |
gtttggtggtcttggcgaaatgacaattctttttgtttttcaaatgcttttatcttttattaccgtcttatcatggaagcccgtaatataactcttatct |
104 |
Q |
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| T |
36791517 |
gtttggtggtcttgacgaaatgagaattctttttgtttctcaaatgcttttatcttttattaccgtcttatcatggaagctcgtaatataactcttatct |
36791616 |
T |
|
| Q |
105 |
ttatctcttgcatttctagttctctacgagacaagaacattgacggatcaaatggaattccttcaattcat---gcatcattcttaatgttgattgcatc |
201 |
Q |
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| T |
36791617 |
ttatctcttgcatttctagttctctacgagacaagaacatagacggatcaaatggaattccttcaattcctcttgcaccattcttaatgttgattgcatc |
36791716 |
T |
|
| Q |
202 |
atgtcttggcaaccgtgtcaaggttggatgttatggtttgcttcatcatccttccgtgatatggatctctagtttctcgggatttctttcagaaaccttt |
301 |
Q |
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| T |
36791717 |
atgtcttggcaaccgtgtcaaagttggattttatggtttgcttcatcatccttccgtgatatggatctctagtttctcgggatttctttcagaaa--ttt |
36791814 |
T |
|
| Q |
302 |
aatattcttcatgcttagctacatgctattcatcaaagactttgttggctaagcaattggattaccatgacattatttgtttcaatgattctcttcattc |
401 |
Q |
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| T |
36791815 |
aatattcttcatgcttagctccatgctattcatcaaagactttgttgactaagcaattggattaccatgacattatttgtttcattgattctcttcattc |
36791914 |
T |
|
| Q |
402 |
cgtcgatatactccatgatcaaacgccaaagcttcacaagtatgctaagatcttcttcactaatatatattgatatgtttgcatcactcatattctccaa |
501 |
Q |
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| T |
36791915 |
catcgatatactccatgatcaaacgccaaggcttcacaagtatactaagatcttcttcactaatatatattgacatgtttgcatcactcatattctctaa |
36792014 |
T |
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| Q |
502 |
gaaaatagttgtgtagacatccttaa |
527 |
Q |
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| T |
36792015 |
gaaaatagttgtgtaaacatccttaa |
36792040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 5 - 78
Target Start/End: Original strand, 36791352 - 36791431
Alignment:
| Q |
5 |
gtttggtggtcttggcgaaatgacaattctttttgtttt-----tcaaatgc-ttttatcttttattaccgtcttatcat |
78 |
Q |
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|||||||||||||||||||||| |||| |||||| |||| |||||||| |||||||| |||||||||||||||||| |
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| T |
36791352 |
gtttggtggtcttggcgaaatggcaatccttttttttttctttctcaaatgctttttatctcttattaccgtcttatcat |
36791431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 342 - 426
Target Start/End: Complemental strand, 12078142 - 12078058
Alignment:
| Q |
342 |
tttgttggctaagcaattggattaccatgacattatttgtttcaatgattctcttcattccgtcgatatactccatgatcaaacg |
426 |
Q |
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| T |
12078142 |
tttgttggctaaacaaatggattatcatgacattatttggttcattaattctttccattgtgttgatatcctccatgatcaaacg |
12078058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 342 - 448
Target Start/End: Complemental strand, 34117221 - 34117115
Alignment:
| Q |
342 |
tttgttggctaagcaattggattaccatgacattatttgtttcaatgattctcttcattccgtcgatatactccatgatcaaacgccaaagcttcacaag |
441 |
Q |
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||||||||| ||||| || ||||| ||||||| |||||||| ||||||||||||| || |||||||| |||||||||| | ||| | ||||||| |
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| T |
34117221 |
tttgttggccaagcagttcgattataatgacatacattgtttcagagattctcttcattatgttgatatactacatgatcaaatgtcaaggtttcacaaa |
34117122 |
T |
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| Q |
442 |
tatgcta |
448 |
Q |
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||||||| |
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| T |
34117121 |
tatgcta |
34117115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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