View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9330_low_12 (Length: 448)
Name: NF9330_low_12
Description: NF9330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9330_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 18 - 413
Target Start/End: Complemental strand, 2386313 - 2385918
Alignment:
| Q |
18 |
cacagatgatacaagtagcaacaaaaaagcacttttctttcaatggtggtattttggtgtttgtgctggaagcctaatgggtgtaacagtcatgtcttac |
117 |
Q |
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| T |
2386313 |
cacagatgatacaagtagcaacaaaaaagcacttttctttcaatggtggtattttggtgtttgtgctggaagcctaatgggtgtaacagtcatgtcttac |
2386214 |
T |
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| Q |
118 |
atccaagatacatttggttgggtaatagggtttgctatacctgcgatttcgatgcttctttctatcttgattttctctagtggaagctctatatattcgt |
217 |
Q |
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| T |
2386213 |
atccaagatacatttggttgggtaatagggtttgcgatacctgcgatttcgatgcttctttctatcttgattttctctagtggaagctctatatattcgt |
2386114 |
T |
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| Q |
218 |
ataaagaacaagatgatgatgatcttcaagataagaagcctttcacgaaaatgtttaaaagtattaaagaatctgcattgaaatgcttccattgtgaaat |
317 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2386113 |
ataaagaacaagatgatgatgatcttcaagataaaaagcctttcacgaaaatgtttaaaagtattaaagaatctgcattgaaatgcttccattgtgaaat |
2386014 |
T |
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| Q |
318 |
tactctaccaaatgacaagtctgaaaatgtggaactagagtaagttacactttcatacacataaatttacatttactaaattactatttatagttt |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
2386013 |
tactctaccaaatgacaagtctgaaaatgtggaactagagtaagttacactttcttacacataaatttacatttactaaattactatttatagttt |
2385918 |
T |
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