View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9330_low_14 (Length: 432)
Name: NF9330_low_14
Description: NF9330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9330_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 7 - 420
Target Start/End: Complemental strand, 20059887 - 20059493
Alignment:
| Q |
7 |
catctaattcaacgttgacaagccacgtggaaaataagcatagaacttacgaaggtgaagtgaccgctgaagacgaatggctcgaagccaagttcctttt |
106 |
Q |
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| T |
20059887 |
catctaattcaacgttgacaagccacgtggaaaataagcatagaacttacgaaggtgaagtgaccgctgaagacgaatggctcgaagccatgttcctttt |
20059788 |
T |
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| Q |
107 |
tagaaacagaagttattagcaaaaactagctttgacacaaatgaaatgtgtatatatcgctaaacaaagagaaccttacagattcaactgctggcagcta |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20059787 |
tagaaacagaagttattagcaaaaactagctttgacacaaatgaaatgtgtatatatcgctaaacaaagagaaccttacagattcaactgctggcagcta |
20059688 |
T |
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| Q |
207 |
gttgcagaagactttgtaaaattgttgtcagataaatctctgaaagagaccatacagtt--actaaatttagtttcttcgtaactcaactgtgcaacgct |
304 |
Q |
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| T |
20059687 |
gttgcagaagactttgtaaaattgttgtcagataaatctctgaaagagaccatatagttagacaaaattaagtttcttcataactcaattgtgcaatgct |
20059588 |
T |
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| Q |
305 |
aaaatcctagtgacaggtttaaattatgcaattggagaaagcatggtaagtgatatatgctaacatgttaattttgaagttcagtatccagtcttgaatc |
404 |
Q |
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| T |
20059587 |
aaa---------------------tatgcaattggagaaagcatggtaagtgaaatatgctaacatgttaattttgaagttcagtatccagtcttgaatc |
20059509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 326 - 413
Target Start/End: Complemental strand, 49684510 - 49684424
Alignment:
| Q |
326 |
aattatgcaattggagaaagcatggtaagtgatatatgctaacatgttaattttgaagttcagtatccagtcttgaatcggtccattc |
413 |
Q |
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| T |
49684510 |
aattatgcaattagagaaaacatagttaagga-atatgctaatatgtaaatttcgaagttcagtatccagttttgaattggtcaattc |
49684424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 362 - 408
Target Start/End: Complemental strand, 49688925 - 49688879
Alignment:
| Q |
362 |
tgctaacatgttaattttgaagttcagtatccagtcttgaatcggtc |
408 |
Q |
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|||||||||||||||||||||||| || ||||| |||||||| |||| |
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| T |
49688925 |
tgctaacatgttaattttgaagtttagcatccattcttgaattggtc |
49688879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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