View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9330_low_17 (Length: 430)
Name: NF9330_low_17
Description: NF9330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9330_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 402
Target Start/End: Complemental strand, 23347153 - 23346753
Alignment:
| Q |
1 |
atatctataattgtttttaacacagcaattagggtataagttcaacatattctgtcatgttgcattctactaatctgcttagtaattaggctacctctca |
100 |
Q |
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| T |
23347153 |
atatctataattgtttttaacac-gcaattagggtataagttcaacatattctgtcatgttgcattctactaatctgcttagtaattaggctacctctca |
23347055 |
T |
|
| Q |
101 |
tctaagtcacctaaaagagaacacttgtaattccgaaaggatagatatcattgattaactgtgacaaacgtatcatagcccaaataaaagatagaataac |
200 |
Q |
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||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
23347054 |
tctcagtcacctaaaagagaaaacttgtaattccgaaatgatagatatcattgattaactgtgacaaacgtatcatggcccaaataaaagatagaataac |
23346955 |
T |
|
| Q |
201 |
agaaaaattctgtccatacgtgccaaattgataatgaatccaaaaattctactatatggagggtactattccattccactaactacttaaattagtattt |
300 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
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| T |
23346954 |
agaaaaattctgtctatacgtgccaaattgataatgaatccaaaaattctactatatggagggtactattccattccactaactaatttaattagtattt |
23346855 |
T |
|
| Q |
301 |
cctatgccacagatgacgtcatcatcctgaaatgcgaatatcaaatgatgagtgaccatgcgtgtaccacatgaacggtcgatatgcaaacttgcttata |
400 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23346854 |
cctatgccacagatgacgtcatcatcctgaaatgccaatatcaaatgatgagtgaccatgcgtgtaccacatgaacggtcgatatgcaaacttgcttata |
23346755 |
T |
|
| Q |
401 |
ta |
402 |
Q |
| |
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|| |
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|
| T |
23346754 |
ta |
23346753 |
T |
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