View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9330_low_21 (Length: 415)
Name: NF9330_low_21
Description: NF9330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9330_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 19 - 405
Target Start/End: Original strand, 24355974 - 24356358
Alignment:
| Q |
19 |
aaagcacatgtttttcatgcatttatcagtcatctttcttgtggggttacatattctcttcagtgattggtggagctttggtagatagatatggaggaaa |
118 |
Q |
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| T |
24355974 |
aaagcacatgtttttcatgcatttatcagtcatctttcttgtggggttacatattctcttcagtgattggtggagcattggtagatagatatggaggaaa |
24356073 |
T |
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| Q |
119 |
aagggtgatggcttggggtgtattgttgtggtctttagcaactctccttacacctttagcagccaaccactcaacaatagccttgttggcaattcgcgct |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24356074 |
aagggtgatggcttggggtgtattgttgtggtctttagcaactctccttacacctttagcagccaaccactcaacaatagccttgttggcaattcgcgct |
24356173 |
T |
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| Q |
219 |
ttcttcggactagctgaaggagtagctcttccatccatgagcactctcttatcaaggtgatacgtctaaaatctccttagacatatatatatttaaggtt |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |
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| T |
24356174 |
ttcttcggactagctgaaggagtagctcttccatccatgagcactctcttatcaaggtgatacctctaaaatctccttagac--atatatatttaaggtt |
24356271 |
T |
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| Q |
319 |
taattattcatttagtcttgcaaatatggctaactttgatgttagttcttgtaaataaatagttaaaccgatacttagctatctctg |
405 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24356272 |
taattattcatttagtcttgcaaatatggctaactttgatgttagttcttgtaaataaatagttaaaccgatacttagctatctctg |
24356358 |
T |
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