View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9330_low_22 (Length: 408)
Name: NF9330_low_22
Description: NF9330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9330_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 172; Significance: 3e-92; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 13 - 231
Target Start/End: Original strand, 31490834 - 31491053
Alignment:
| Q |
13 |
ttcacaaaagaccaatgttatatatagcgaagaaaaacatagcaaacagaccacggatgaaatacaaccattggtttattggttgtttgactgaatgcat |
112 |
Q |
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| T |
31490834 |
ttcacaaaagaccaatgctatatatagcgaagaaaaacatagtgagcagaccacgaatgaaatacaaccattggtttattggttgtttgactgaatgcat |
31490933 |
T |
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| Q |
113 |
ggcttgatggaagtaaaagggaccta-tgcaaatgcttgttagctgtcgttgcgatatatatcattttccttcgcaaaaagttcggttcgactagttagg |
211 |
Q |
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| T |
31490934 |
ggattgatggaagtaaaagggacctactgcaaatgcttgttaggtgtcgtcacgatatatatcattttccttcgcaaaaagttcggttcgactagttagg |
31491033 |
T |
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| Q |
212 |
ttcaactaatttcaacctaa |
231 |
Q |
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||||| |||||||||||||| |
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| T |
31491034 |
ttcaattaatttcaacctaa |
31491053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 230 - 396
Target Start/End: Original strand, 31491082 - 31491248
Alignment:
| Q |
230 |
aaaaagtttactagagactcaattgcccatatcaacattttgatcaacactatggcccaatacttaaaaacaaacaatttaaacaaataagttgatagag |
329 |
Q |
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| T |
31491082 |
aaaaagtttactagagactcaattgcccatatcaacattttgatcaacactatggcccaatacttaaaaacaaacaatttaaacaaataagttgatagag |
31491181 |
T |
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| Q |
330 |
ggacaacacataaattcattgtagtgaaactgggtctccaccactaccttgaagagtgtcatatatg |
396 |
Q |
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| T |
31491182 |
ggacaacacataaattcattgtagtgaaactgggtctccaccactaccttgaagagtgtcatatatg |
31491248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 258 - 388
Target Start/End: Original strand, 50445730 - 50445865
Alignment:
| Q |
258 |
atatcaacattttgatcaacactatggcccaatactt-------aaaaacaaacaatttaaacaaataagttgatagagggacaacacataaattcattg |
350 |
Q |
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||||||||||||||| ||||| ||||||||||||||| ||||| | ||||||||||||||||| |||||||||||| |||||| ||||||| || |
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| T |
50445730 |
atatcaacattttgagcaacaatatggcccaatacttcaaaaataaaaaaacacaatttaaacaaataaattgatagaggga-aacaca-aaattcactg |
50445827 |
T |
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| Q |
351 |
tagtgaaactgggtctccaccactaccttgaagagtgt |
388 |
Q |
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| T |
50445828 |
tagtgaaattgggtctctaccactaccttgaacagtgt |
50445865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 260 - 388
Target Start/End: Original strand, 7840984 - 7841121
Alignment:
| Q |
260 |
atcaacattttgatcaacactatggcccaatactt-------aaaaacaaa----caatttaaacaaataagttgatagagggacaacacataaattcat |
348 |
Q |
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||||||||||||| ||||| ||||||||||||||| ||||||||| |||||||||||||||| |||||||||||| |||||| ||||| | |
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| T |
7840984 |
atcaacattttgagcaacaatatggcccaatacttcaaaaataaaaacaaaaacacaatttaaacaaataaattgatagaggga-aacaca-aaatttac |
7841081 |
T |
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| Q |
349 |
tgtagtgaaactgggtctccaccactaccttgaagagtgt |
388 |
Q |
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| T |
7841082 |
cgtagtgaaattgggtctctaccactaccttgaacagtgt |
7841121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 303 - 387
Target Start/End: Complemental strand, 27077383 - 27077301
Alignment:
| Q |
303 |
acaatttaaacaaataagttgatagagggacaacacataaattcattgtagtgaaactgggtctccaccactaccttgaagagtg |
387 |
Q |
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| T |
27077383 |
acaatttaaacaaataaattgatagaggga-aacaca-aaattcaccatagtgaaattgggtctctaccactaccttgaacagtg |
27077301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 19 - 109
Target Start/End: Complemental strand, 52545018 - 52544929
Alignment:
| Q |
19 |
aaagaccaatgttatatatagcgaagaaaaacatagcaaacagaccacggatgaaatacaaccattggtttattggttgtttgactgaatg |
109 |
Q |
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| T |
52545018 |
aaagaacaatgctatatacagcgaagaaaaacattgcga-cacaccacgaatgaaatacaaccattgaattattggctatttgactgaatg |
52544929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 303 - 388
Target Start/End: Original strand, 51994370 - 51994453
Alignment:
| Q |
303 |
acaatttaaacaaataagttgatagagggacaacacataaattcattgtagtgaaactgggtctccaccactaccttgaagagtgt |
388 |
Q |
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| T |
51994370 |
acaatttaaacaaataaattaatagaggga-aacaca-aaattcgccgtagtgaaattgggtctctaccactaccttgaacagtgt |
51994453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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