View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9330_low_29 (Length: 325)

Name: NF9330_low_29
Description: NF9330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9330_low_29
NF9330_low_29
[»] chr7 (15 HSPs)
chr7 (4-195)||(7848004-7848196)
chr7 (9-195)||(47573094-47573282)
chr7 (4-57)||(21263322-21263375)
chr7 (6-57)||(5769309-5769360)
chr7 (4-57)||(21261978-21262031)
chr7 (5-57)||(12628032-12628084)
chr7 (6-57)||(5737177-5737228)
chr7 (73-116)||(21262051-21262094)
chr7 (6-57)||(47578588-47578639)
chr7 (81-119)||(7849196-7849234)
chr7 (3-57)||(23456682-23456736)
chr7 (4-57)||(12629432-12629485)
chr7 (80-117)||(23525665-23525702)
chr7 (73-117)||(21263259-21263303)
chr7 (5-57)||(23525580-23525632)
[»] chr1 (11 HSPs)
chr1 (6-195)||(35713557-35713749)
chr1 (4-57)||(17240715-17240768)
chr1 (73-119)||(35712523-35712569)
chr1 (5-57)||(21747942-21747994)
chr1 (4-50)||(42098740-42098786)
chr1 (5-57)||(17242106-17242158)
chr1 (73-105)||(51676288-51676320)
chr1 (6-57)||(9008761-9008811)
chr1 (6-57)||(42097326-42097377)
chr1 (73-194)||(42097396-42097517)
chr1 (5-58)||(48030239-48030291)
[»] chr5 (2 HSPs)
chr5 (5-195)||(27490098-27490293)
chr5 (73-132)||(27491200-27491259)
[»] chr3 (13 HSPs)
chr3 (79-195)||(46651773-46651889)
chr3 (4-57)||(36438776-36438829)
chr3 (4-57)||(15438468-15438521)
chr3 (4-57)||(34799863-34799916)
chr3 (4-57)||(42278458-42278511)
chr3 (5-57)||(15439682-15439734)
chr3 (73-116)||(39605649-39605692)
chr3 (81-119)||(34825663-34825701)
chr3 (9-62)||(46651699-46651751)
chr3 (4-57)||(37086744-37086797)
chr3 (73-117)||(34799935-34799979)
chr3 (73-117)||(34801331-34801375)
chr3 (5-57)||(36437213-36437265)
[»] chr2 (2 HSPs)
chr2 (73-195)||(29042404-29042526)
chr2 (5-53)||(25650011-25650059)
[»] chr8 (6 HSPs)
chr8 (85-195)||(3845546-3845656)
chr8 (5-57)||(9755683-9755735)
chr8 (81-119)||(26521939-26521977)
chr8 (4-57)||(14101092-14101145)
chr8 (5-57)||(40462269-40462321)
chr8 (5-57)||(14099744-14099795)
[»] chr6 (8 HSPs)
chr6 (4-57)||(21382480-21382533)
chr6 (6-57)||(21383823-21383874)
chr6 (5-57)||(9307143-9307195)
chr6 (73-117)||(26545807-26545851)
chr6 (5-57)||(32146095-32146147)
chr6 (73-116)||(21383761-21383804)
chr6 (4-56)||(5858896-5858948)
chr6 (73-117)||(21382552-21382596)
[»] chr4 (21 HSPs)
chr4 (5-57)||(1995867-1995919)
chr4 (4-57)||(1997061-1997114)
chr4 (4-57)||(16314204-16314257)
chr4 (5-57)||(24685023-24685075)
chr4 (6-57)||(23506386-23506437)
chr4 (4-58)||(47376530-47376585)
chr4 (5-57)||(20673564-20673616)
chr4 (5-57)||(23504894-23504946)
chr4 (73-116)||(1996998-1997041)
chr4 (6-57)||(5169313-5169364)
chr4 (6-57)||(17288631-17288682)
chr4 (6-56)||(2753069-2753119)
chr4 (7-57)||(56083355-56083404)
chr4 (4-57)||(2751516-2751569)
chr4 (5-50)||(17288766-17288811)
chr4 (4-57)||(44353874-44353927)
chr4 (73-117)||(1995938-1995982)
chr4 (73-105)||(12862665-12862697)
chr4 (4-60)||(24126198-24126254)
chr4 (5-57)||(39661320-39661372)
chr4 (73-105)||(56083424-56083456)
[»] scaffold0071 (2 HSPs)
scaffold0071 (4-57)||(23670-23723)
scaffold0071 (5-57)||(22457-22509)
[»] scaffold0061 (1 HSPs)
scaffold0061 (5-50)||(11264-11309)
[»] scaffold0049 (1 HSPs)
scaffold0049 (6-55)||(386-435)
[»] scaffold0471 (1 HSPs)
scaffold0471 (4-60)||(10786-10842)
[»] scaffold0408 (1 HSPs)
scaffold0408 (5-60)||(10086-10139)


Alignment Details
Target: chr7 (Bit Score: 119; Significance: 9e-61; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 4 - 195
Target Start/End: Original strand, 7848004 - 7848196
Alignment:
Q  4 aagggttaatgggcttttacccccctgccatatggggctcttttggtatacccc-tataannnnnnnnnnggagaatcccccttgtaaaatgaagattct 102  Q
    |||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||           |||| ||||||||||||||||||||||||    
T  7848004 aagggttaatgggcttttacccccctgccatatgagggtcttttggtataccccctataaaaaaaaacttagagattcccccttgtaaaatgaagattct 7848103  T
Q  103 ttggcttacacccctgaaccaatctgactgtgcacataagctgccatggagcgctgactgtataaaattgcatatttggcacgttgacttggc 195  Q
     ||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  7848104 ctggctaacacccctgaaccaatctgattgtgcacataagctgacatggagcgctgactgtataaaattgcatatttggcacgctgacttggc 7848196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 9 - 195
Target Start/End: Original strand, 47573094 - 47573282
Alignment:
Q  9 ttaatgggcttttacccccctgccatatggggctcttttggtatac--ccctataannnnnnnnnnggagaatcccccttgtaaaatgaagattctttgg 106  Q
    ||||| ||||||||||||||||  |||||||| |||||||||||||  ||||||||          ||||| ||  |||||||||||||||||| |||||    
T  47573094 ttaataggcttttacccccctgttatatgggggtcttttggtatactcccctataaaaaaaaacttggagattcttccttgtaaaatgaagattttttgg 47573193  T
Q  107 cttacacccctgaaccaatctgactgtgcacataagctgccatggagcgctgactgtataaaattgcatatttggcacgttgacttggc 195  Q
     || ||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||||| |||||||||| |||||||||||    
T  47573194 tttgcacccctgaaccaatctgactgtgcacataagctgacatgggacgctgactgtataaaattgaatatttggcatgttgacttggc 47573282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 21263375 - 21263322
Alignment:
Q  4 aagggttaatgggcttttacccccctgccatatggggctcttttggtatacccc 57  Q
    |||||||||| |||||| ||||||||||||||||||| ||||||||||||||||    
T  21263375 aagggttaataggctttcacccccctgccatatgggggtcttttggtatacccc 21263322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 6 - 57
Target Start/End: Complemental strand, 5769360 - 5769309
Alignment:
Q  6 gggttaatgggcttttacccccctgccatatggggctcttttggtatacccc 57  Q
    |||||||| |||||||||||||||||||| ||||| ||||||||||||||||    
T  5769360 gggttaataggcttttacccccctgccatttgggggtcttttggtatacccc 5769309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 21261978 - 21262031
Alignment:
Q  4 aagggttaatgggcttttacccccctgccatatggggctcttttggtatacccc 57  Q
    |||||||||| |||||||||||||||||||| | ||| ||||||||||||||||    
T  21261978 aagggttaataggcttttacccccctgccatttaggggtcttttggtatacccc 21262031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 12628032 - 12628084
Alignment:
Q  5 agggttaatgggcttttacccccctgccatatggggctcttttggtatacccc 57  Q
    ||||||||| |||||||||||||||||||| || || ||||||||| ||||||    
T  12628032 agggttaataggcttttacccccctgccatttgcgggtcttttggtttacccc 12628084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 6 - 57
Target Start/End: Original strand, 5737177 - 5737228
Alignment:
Q  6 gggttaatgggcttttacccccctgccatatggggctcttttggtatacccc 57  Q
    |||||||| |||||||||||||||||||| |||||   ||||||||||||||    
T  5737177 gggttaataggcttttacccccctgccatttgggggctttttggtatacccc 5737228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 73 - 116
Target Start/End: Original strand, 21262051 - 21262094
Alignment:
Q  73 ggagaatcccccttgtaaaatgaagattctttggcttacacccc 116  Q
    ||||| |||||||||||||||| ||||||||||| |||||||||    
T  21262051 ggagattcccccttgtaaaatgtagattctttggtttacacccc 21262094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 6 - 57
Target Start/End: Complemental strand, 47578639 - 47578588
Alignment:
Q  6 gggttaatgggcttttacccccctgccatatggggctcttttggtatacccc 57  Q
    |||||||| |||||||||||||||||||| ||||   |||||||||||||||    
T  47578639 gggttaataggcttttacccccctgccatttgggagacttttggtatacccc 47578588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 119
Target Start/End: Complemental strand, 7849234 - 7849196
Alignment:
Q  81 ccccttgtaaaatgaagattctttggcttacacccctga 119  Q
    |||||||||||||||||||||||||| ||||| ||||||    
T  7849234 ccccttgtaaaatgaagattctttggtttacatccctga 7849196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 23456736 - 23456682
Alignment:
Q  3 caagggttaatgggcttttacccccctgccatatggggctcttttggtatacccc 57  Q
    ||||||||||| || |||||| ||||||||||||| |  ||||||||||||||||    
T  23456736 caagggttaataggtttttactcccctgccatatgagcgtcttttggtatacccc 23456682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 12629485 - 12629432
Alignment:
Q  4 aagggttaatgggcttttacccccctgccatatggggctcttttggtatacccc 57  Q
    |||||||||| |||||||||||||||||||| |  || ||||||||| ||||||    
T  12629485 aagggttaataggcttttacccccctgccatttacgggtcttttggtttacccc 12629432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 117
Target Start/End: Original strand, 23525665 - 23525702
Alignment:
Q  80 cccccttgtaaaatgaagattctttggcttacacccct 117  Q
    ||||| ||||||||||||||||||||| ||||||||||    
T  23525665 cccccctgtaaaatgaagattctttggtttacacccct 23525702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 117
Target Start/End: Complemental strand, 21263303 - 21263259
Alignment:
Q  73 ggagaatcccccttgtaaaatgaagattctttggcttacacccct 117  Q
    ||||| |||||||||||||||| ||||||||||| |||| |||||    
T  21263303 ggagattcccccttgtaaaatgtagattctttggtttacccccct 21263259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 23525580 - 23525632
Alignment:
Q  5 agggttaatgggcttttacccccctgccatatggggctcttttggtatacccc 57  Q
    ||||||||| |||||||||||| ||||||| |||||   ||||||||||||||    
T  23525580 agggttaataggcttttaccccgctgccatttgggggatttttggtatacccc 23525632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 117; Significance: 1e-59; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 6 - 195
Target Start/End: Complemental strand, 35713749 - 35713557
Alignment:
Q  6 gggttaatgggcttttacccccctgccatatggggctcttttggtatacccctata---annnnnnnnnnggagaatcccccttgtaaaatgaagattct 102  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||   |          ||||| ||||||||||||||||||||||||    
T  35713749 gggttaatgggcttttacccccctgccatatgggggtcttttggtatacccccatatcaaaaaaaaacttggagattcccccttgtaaaatgaagattct 35713650  T
Q  103 ttggcttacacccctgaaccaatctgactgtgcacataagctgccatggagcgctgactgtataaaattgcatatttggcacgttgacttggc 195  Q
    |||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  35713649 ttggtttacacccctgaaccaatctgaccgtgcacataagctgacatggagcgctgactgtataaaattgcatatctggcacgctgacttggc 35713557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 17240715 - 17240768
Alignment:
Q  4 aagggttaatgggcttttacccccctgccatatggggctcttttggtatacccc 57  Q
    |||||||||| |||||||||||||||||||| ||||| ||||||||||||||||    
T  17240715 aagggttaataggcttttacccccctgccatttgggggtcttttggtatacccc 17240768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 73 - 119
Target Start/End: Original strand, 35712523 - 35712569
Alignment:
Q  73 ggagaatcccccttgtaaaatgaagattctttggcttacacccctga 119  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||||    
T  35712523 ggagattcccccttgtaaaatgaagattctttggtttacacccctga 35712569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 21747942 - 21747994
Alignment:
Q  5 agggttaatgggcttttacccccctgccatatggggctcttttggtatacccc 57  Q
    ||||||||| |||||||||||||||||||| ||||| ||||||||| ||||||    
T  21747942 agggttaataggcttttacccccctgccatttgggggtcttttggtttacccc 21747994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 50
Target Start/End: Complemental strand, 42098786 - 42098740
Alignment:
Q  4 aagggttaatgggcttttacccccctgccatatggggctcttttggt 50  Q
    |||||||||| |||||||||||||||||||| ||||| |||||||||    
T  42098786 aagggttaataggcttttacccccctgccatttgggggtcttttggt 42098740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 17242158 - 17242106
Alignment:
Q  5 agggttaatgggcttttacccccctgccatatggggctcttttggtatacccc 57  Q
    ||||||||| |||||||||||||||||||| |||||   ||||||||||||||    
T  17242158 agggttaataggcttttacccccctgccatttgggggctttttggtatacccc 17242106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 105
Target Start/End: Complemental strand, 51676320 - 51676288
Alignment:
Q  73 ggagaatcccccttgtaaaatgaagattctttg 105  Q
    |||||||||||||||||||||||||||||||||    
T  51676320 ggagaatcccccttgtaaaatgaagattctttg 51676288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 6 - 57
Target Start/End: Original strand, 9008761 - 9008811
Alignment:
Q  6 gggttaatgggcttttacccccctgccatatggggctcttttggtatacccc 57  Q
    |||||||| |||||||||||| ||||||| ||||| ||||||||||||||||    
T  9008761 gggttaataggcttttacccc-ctgccatttgggggtcttttggtatacccc 9008811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 6 - 57
Target Start/End: Original strand, 42097326 - 42097377
Alignment:
Q  6 gggttaatgggcttttacccccctgccatatggggctcttttggtatacccc 57  Q
    |||||||| || ||||||||||||||||| ||||| ||||||||| ||||||    
T  42097326 gggttaataggtttttacccccctgccatttgggggtcttttggtttacccc 42097377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 194
Target Start/End: Original strand, 42097396 - 42097517
Alignment:
Q  73 ggagaatcccccttgtaaaatgaagattctttggcttacacccctgaaccaatctgactgtgcacataagctgccatggagcgctgactgtataaaattg 172  Q
    ||||| ||||||||||||  | |||||||||||| ||    |||| |||| ||||||||||||| | | |||| | |||   |||||||| | |||||||    
T  42097396 ggagattcccccttgtaatttaaagattctttggttttagaccctcaacccatctgactgtgcagaaacgctgacgtggcatgctgactggaaaaaattg 42097495  T
Q  173 catatttggcacgttgacttgg 194  Q
    ||||||||||||| ||| ||||    
T  42097496 catatttggcacgctgagttgg 42097517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 58
Target Start/End: Complemental strand, 48030291 - 48030239
Alignment:
Q  5 agggttaatgggcttttacccccctgccatatggggctcttttggtatacccct 58  Q
    ||||||||| ||||||||||||| |||||| ||||| ||||||| |||||||||    
T  48030291 agggttaataggcttttaccccc-tgccatttgggggtcttttgatatacccct 48030239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 5 - 195
Target Start/End: Original strand, 27490098 - 27490293
Alignment:
Q  5 agggttaatgggcttttacccccctgccatatggggctcttttggtatacccc--tat---aannnnnnnnnnggagaatcccccttgtaaaatgaagat 99  Q
    ||||||||| |||||||||| ||||| ||||||||| ||||||||||||||||  |||   ||          ||||| |||||||||||||||||||||    
T  27490098 agggttaataggcttttacctccctgtcatatgggggtcttttggtatacccccttatcaaaaaaaaaaacttggagattcccccttgtaaaatgaagat 27490197  T
Q  100 tctttggcttacacccctgaaccaatctgactgtgcacataagctgccatggagcgctgactgtataaaattgcatatttggcacgttgacttggc 195  Q
    ||||||| |||||||||||||||||| ||||||||||||||||||| |||||  ||||||||||||||||||| |||||||||| |||||||||||    
T  27490198 tctttggtttacacccctgaaccaatatgactgtgcacataagctgacatgggacgctgactgtataaaattgaatatttggcatgttgacttggc 27490293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 73 - 132
Target Start/End: Complemental strand, 27491259 - 27491200
Alignment:
Q  73 ggagaatcccccttgtaaaatgaagattctttggcttacacccctgaaccaatctgactg 132  Q
    ||||| ||||| |||||||||||||||||||||| ||||||||||||  | |||||||||    
T  27491259 ggagattccccattgtaaaatgaagattctttggtttacacccctgatgccatctgactg 27491200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 93; Significance: 3e-45; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 79 - 195
Target Start/End: Original strand, 46651773 - 46651889
Alignment:
Q  79 tcccccttgtaaaatgaagattctttggcttacacccctgaaccaatctgactgtgcacataagctgccatggagcgctgactgtataaaattgcatatt 178  Q
    ||||| ||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  46651773 tcccctttgtaaaataaagattttttggcttacacccctgaaccaatctgattgtgcacataagctgacatggagcgctgactgtataaaattgcatatt 46651872  T
Q  179 tggcacgttgacttggc 195  Q
    ||||||| |||||||||    
T  46651873 tggcacgctgacttggc 46651889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 36438829 - 36438776
Alignment:
Q  4 aagggttaatgggcttttacccccctgccatatggggctcttttggtatacccc 57  Q
    |||||||||| |||||||||||||||||||| ||||| ||||||||| ||||||    
T  36438829 aagggttaataggcttttacccccctgccatttgggggtcttttggtttacccc 36438776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 15438468 - 15438521
Alignment:
Q  4 aagggttaatgggcttttacccccctgccatatggggctcttttggtatacccc 57  Q
    |||||||||| |||||||||||||||||||| || || | ||||||||||||||    
T  15438468 aagggttaataggcttttacccccctgccatttgagggttttttggtatacccc 15438521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 34799863 - 34799916
Alignment:
Q  4 aagggttaatgggcttttacccccctgccatatggggctcttttggtatacccc 57  Q
    |||||||||| | |||||||||||||||||| ||||| ||||||||| ||||||    
T  34799863 aagggttaatagacttttacccccctgccatttgggggtcttttggtttacccc 34799916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 42278511 - 42278458
Alignment:
Q  4 aagggttaatgggcttttacccccctgccatatggggctcttttggtatacccc 57  Q
    |||||||||| ||||||||||||||| |||| ||||| ||||||||| ||||||    
T  42278511 aagggttaataggcttttacccccctaccatttgggggtcttttggtttacccc 42278458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 15439734 - 15439682
Alignment:
Q  5 agggttaatgggcttttacccccctgccatatggggctcttttggtatacccc 57  Q
    ||||||||| |||||||||||||| ||||| ||||| ||||||||| ||||||    
T  15439734 agggttaataggcttttacccccccgccatttgggggtcttttggtttacccc 15439682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 73 - 116
Target Start/End: Original strand, 39605649 - 39605692
Alignment:
Q  73 ggagaatcccccttgtaaaatgaagattctttggcttacacccc 116  Q
    ||||| |||||| ||||||||||||||||||||| |||||||||    
T  39605649 ggagattcccccctgtaaaatgaagattctttggtttacacccc 39605692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 119
Target Start/End: Original strand, 34825663 - 34825701
Alignment:
Q  81 ccccttgtaaaatgaagattctttggcttacacccctga 119  Q
    |||||||||||||||| ||||||||| ||||||||||||    
T  34825663 ccccttgtaaaatgaaaattctttggtttacacccctga 34825701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 62
Target Start/End: Original strand, 46651699 - 46651751
Alignment:
Q  9 ttaatgggcttttacccccctgccatatggggctcttttggtata-cccctataa 62  Q
    |||||||||||||| ||||||||||||||||| |||||||||||| |||||||||    
T  46651699 ttaatgggctttta-ccccctgccatatgggg-tcttttggtataccccctataa 46651751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 37086797 - 37086744
Alignment:
Q  4 aagggttaatgggcttttacccccctgccatatggggctcttttggtatacccc 57  Q
    |||||||||| |||||||||||||||||||| || |  ||||||||| ||||||    
T  37086797 aagggttaataggcttttacccccctgccatttgagcgtcttttggtttacccc 37086744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 117
Target Start/End: Original strand, 34799935 - 34799979
Alignment:
Q  73 ggagaatcccccttgtaaaatgaagattctttggcttacacccct 117  Q
    ||||| ||||||||| |||||||||||||||||| |||| |||||    
T  34799935 ggagattcccccttgcaaaatgaagattctttggtttacccccct 34799979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 117
Target Start/End: Complemental strand, 34801375 - 34801331
Alignment:
Q  73 ggagaatcccccttgtaaaatgaagattctttggcttacacccct 117  Q
    ||||| ||||||||||||||| |||||||||||| |||| |||||    
T  34801375 ggagattcccccttgtaaaataaagattctttggtttacccccct 34801331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 36437213 - 36437265
Alignment:
Q  5 agggttaatgggcttttacccccctgccatatggggctcttttggtatacccc 57  Q
    ||||||||| | |||||||||||||||||| ||||| | ||||||| ||||||    
T  36437213 agggttaatagccttttacccccctgccatttgggggttttttggtttacccc 36437265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 4e-44; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 73 - 195
Target Start/End: Original strand, 29042404 - 29042526
Alignment:
Q  73 ggagaatcccccttgtaaaatgaagattctttggcttacacccctgaaccaatctgactgtgcacataagctgccatggagcgctgactgtataaaattg 172  Q
    ||||| ||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||    
T  29042404 ggagattcccccttgaaaaatgaagattctttggtttacacacctgaaccaatctgactgtgcacataagctgacatggagcgctgaccgtataaaattg 29042503  T
Q  173 catatttggcacgttgacttggc 195  Q
    ||||||||||||| | |||||||    
T  29042504 catatttggcacgcttacttggc 29042526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 25650059 - 25650011
Alignment:
Q  5 agggttaatgggcttttacccccctgccatatggggctcttttggtata 53  Q
    ||||||||| ||||||||||||||||| |||||||  | ||||||||||    
T  25650059 agggttaataggcttttacccccctgcaatatgggcgtattttggtata 25650011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 4e-32; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 85 - 195
Target Start/End: Original strand, 3845546 - 3845656
Alignment:
Q  85 ttgtaaaatgaagattctttggcttacacccctgaaccaatctgactgtgcacataagctgccatggagcgctgactgtataaaattgcatatttggcac 184  Q
    |||||||| ||||||| ||||| ||||||| || |||||| |||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||    
T  3845546 ttgtaaaaggaagattttttggtttacacctctaaaccaaactgactgtgcacataagctgacatgtcgcgctgactgtataaaattgcatatttggcac 3845645  T
Q  185 gttgacttggc 195  Q
    | |||||||||    
T  3845646 gctgacttggc 3845656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 9755683 - 9755735
Alignment:
Q  5 agggttaatgggcttttacccccctgccatatggggctcttttggtatacccc 57  Q
    ||||||||| | |||||||||||||||||| ||||| ||||||||||||||||    
T  9755683 agggttaatagacttttacccccctgccatttgggggtcttttggtatacccc 9755735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 119
Target Start/End: Complemental strand, 26521977 - 26521939
Alignment:
Q  81 ccccttgtaaaatgaagattctttggcttacacccctga 119  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  26521977 ccccttgtaaaatgaagattctttggtttacacccctga 26521939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 14101145 - 14101092
Alignment:
Q  4 aagggttaatgggcttttacccccctgccatatggggctcttttggtatacccc 57  Q
    |||||||||| ||||||||||||||||||||||| |  ||||||||| ||||||    
T  14101145 aagggttaataggcttttacccccctgccatatgagcgtcttttggtttacccc 14101092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 40462269 - 40462321
Alignment:
Q  5 agggttaatgggcttttacccccctgccatatggggctcttttggtatacccc 57  Q
    ||||||||| |||||||||||||||||||||||||   |||||||| ||||||    
T  40462269 agggttaataggcttttacccccctgccatatgggtgacttttggtttacccc 40462321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 14099744 - 14099795
Alignment:
Q  5 agggttaatgggcttttacccccctgccatatggggctcttttggtatacccc 57  Q
    ||||||||| |||||||||||| ||||||| ||||| ||||||||| ||||||    
T  14099744 agggttaataggcttttacccc-ctgccatttgggggtcttttggtttacccc 14099795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 21382480 - 21382533
Alignment:
Q  4 aagggttaatgggcttttacccccctgccatatggggctcttttggtatacccc 57  Q
    |||||||||| |||||| ||||||||||||||||||| ||||||||||||||||    
T  21382480 aagggttaataggctttcacccccctgccatatgggggtcttttggtatacccc 21382533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 6 - 57
Target Start/End: Complemental strand, 21383874 - 21383823
Alignment:
Q  6 gggttaatgggcttttacccccctgccatatggggctcttttggtatacccc 57  Q
    |||||||| |||||||||||||||||||| | ||| ||||||||||||||||    
T  21383874 gggttaataggcttttacccccctgccatttaggggtcttttggtatacccc 21383823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 9307195 - 9307143
Alignment:
Q  5 agggttaatgggcttttacccccctgccatatggggctcttttggtatacccc 57  Q
    ||||||||| || ||||||||||||||||||||||  | ||||||||||||||    
T  9307195 agggttaataggtttttacccccctgccatatgggcgtattttggtatacccc 9307143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 117
Target Start/End: Complemental strand, 26545851 - 26545807
Alignment:
Q  73 ggagaatcccccttgtaaaatgaagattctttggcttacacccct 117  Q
    ||||| ||||||||||||||| |||||||||||| ||||||||||    
T  26545851 ggagattcccccttgtaaaataaagattctttggtttacacccct 26545807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 32146147 - 32146095
Alignment:
Q  5 agggttaatgggcttttacccccctgccatatggggctcttttggtatacccc 57  Q
    ||||||||| |||||||| ||||||||||| ||||| ||||||||| ||||||    
T  32146147 agggttaataggcttttatccccctgccatttgggggtcttttggtttacccc 32146095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 73 - 116
Target Start/End: Complemental strand, 21383804 - 21383761
Alignment:
Q  73 ggagaatcccccttgtaaaatgaagattctttggcttacacccc 116  Q
    ||||| |||||||||||||||| ||||||||||| |||||||||    
T  21383804 ggagattcccccttgtaaaatgtagattctttggtttacacccc 21383761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 5858896 - 5858948
Alignment:
Q  4 aagggttaatgggcttttacccccctgccatatggggctcttttggtataccc 56  Q
    |||||||||| | |||||||||||||||||| ||||| | ||||||| |||||    
T  5858896 aagggttaatagacttttacccccctgccatttgggggttttttggtttaccc 5858948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 117
Target Start/End: Original strand, 21382552 - 21382596
Alignment:
Q  73 ggagaatcccccttgtaaaatgaagattctttggcttacacccct 117  Q
    ||||| |||||||||||||||| ||||||||||| |||| |||||    
T  21382552 ggagattcccccttgtaaaatgtagattctttggtttacccccct 21382596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 1995867 - 1995919
Alignment:
Q  5 agggttaatgggcttttacccccctgccatatggggctcttttggtatacccc 57  Q
    ||||||||| |||||| ||||||||||||||||||| ||||||||||||||||    
T  1995867 agggttaataggctttcacccccctgccatatgggggtcttttggtatacccc 1995919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 1997114 - 1997061
Alignment:
Q  4 aagggttaatgggcttttacccccctgccatatggggctcttttggtatacccc 57  Q
    |||||||||| |||||||||||||||||||| | ||| ||||||||||||||||    
T  1997114 aagggttaataggcttttacccccctgccatttaggggtcttttggtatacccc 1997061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 16314257 - 16314204
Alignment:
Q  4 aagggttaatgggcttttacccccctgccatatggggctcttttggtatacccc 57  Q
    |||||||||| |||||||||||||||||||| ||||| ||||||||| ||||||    
T  16314257 aagggttaataggcttttacccccctgccatttgggggtcttttggtttacccc 16314204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 24685023 - 24685075
Alignment:
Q  5 agggttaatgggcttttacccccctgccatatggggctcttttggtatacccc 57  Q
    ||||||||| |||||||||||||||||||||||||  | ||||||||||||||    
T  24685023 agggttaataggcttttacccccctgccatatgggcgtattttggtatacccc 24685075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 6 - 57
Target Start/End: Complemental strand, 23506437 - 23506386
Alignment:
Q  6 gggttaatgggcttttacccccctgccatatggggctcttttggtatacccc 57  Q
    |||||||| |||||||||||||||||||| ||||| ||||||||| ||||||    
T  23506437 gggttaataggcttttacccccctgccatttgggggtcttttggtttacccc 23506386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 47376530 - 47376585
Alignment:
Q  4 aagggttaatgggcttttacccc-cctgccatatggggctcttttggtatacccct 58  Q
    |||||| |||||||||||||||| |||||||| ||||| |||||||||||||||||    
T  47376530 aagggtcaatgggcttttaccccccctgccatttgggggtcttttggtatacccct 47376585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 20673564 - 20673616
Alignment:
Q  5 agggttaatgggcttttacccccctgccatatggggctcttttggtatacccc 57  Q
    ||||||||| |||||||||||||||||||| ||||  ||||||||| ||||||    
T  20673564 agggttaataggcttttacccccctgccatttgggtgtcttttggtttacccc 20673616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 23504894 - 23504946
Alignment:
Q  5 agggttaatgggcttttacccccctgccatatggggctcttttggtatacccc 57  Q
    ||||||||| |||||||||||||||||||| ||||| |||||| || ||||||    
T  23504894 agggttaataggcttttacccccctgccatttgggggtctttttgtttacccc 23504946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 73 - 116
Target Start/End: Complemental strand, 1997041 - 1996998
Alignment:
Q  73 ggagaatcccccttgtaaaatgaagattctttggcttacacccc 116  Q
    ||||| |||||||||||||||| ||||||||||| |||||||||    
T  1997041 ggagattcccccttgtaaaatgtagattctttggtttacacccc 1996998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 6 - 57
Target Start/End: Original strand, 5169313 - 5169364
Alignment:
Q  6 gggttaatgggcttttacccccctgccatatggggctcttttggtatacccc 57  Q
    |||||||| |||||||||||||||||||| ||||  ||||||||| ||||||    
T  5169313 gggttaataggcttttacccccctgccatttgggcgtcttttggtttacccc 5169364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 6 - 57
Target Start/End: Original strand, 17288631 - 17288682
Alignment:
Q  6 gggttaatgggcttttacccccctgccatatggggctcttttggtatacccc 57  Q
    |||||||| |||||||||||||||||||| |||||  |||||||| ||||||    
T  17288631 gggttaataggcttttacccccctgccatttgggggacttttggtttacccc 17288682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 56
Target Start/End: Complemental strand, 2753119 - 2753069
Alignment:
Q  6 gggttaatgggcttttacccccctgccatatggggctcttttggtataccc 56  Q
    |||||||| |||||||||||||||||||| |||||  ||||||||| ||||    
T  2753119 gggttaataggcttttacccccctgccatttgggggacttttggtagaccc 2753069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 57
Target Start/End: Original strand, 56083355 - 56083404
Alignment:
Q  7 ggttaatgggcttttacccccctgccatatggggctcttttggtatacccc 57  Q
    ||||||| |||||||||||| ||||||| ||||| ||||||||||||||||    
T  56083355 ggttaataggcttttacccc-ctgccatttgggggtcttttggtatacccc 56083404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 2751516 - 2751569
Alignment:
Q  4 aagggttaatgggcttttacccccctgccatatggggctcttttggtatacccc 57  Q
    ||||||||||  ||||||| ||||||||||| |||||  |||||||||||||||    
T  2751516 aagggttaataagcttttatccccctgccatttgggggacttttggtatacccc 2751569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 17288811 - 17288766
Alignment:
Q  5 agggttaatgggcttttacccccctgccatatggggctcttttggt 50  Q
    ||||||||| |||||||||||||||||||| |||||  ||||||||    
T  17288811 agggttaataggcttttacccccctgccatttgggggacttttggt 17288766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 44353874 - 44353927
Alignment:
Q  4 aagggttaatgggcttttacccccctgccatatggggctcttttggtatacccc 57  Q
    |||||||||  | |||||||||||||||||| |||||  |||||||||||||||    
T  44353874 aagggttaacagacttttacccccctgccatttgggggacttttggtatacccc 44353927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 117
Target Start/End: Original strand, 1995938 - 1995982
Alignment:
Q  73 ggagaatcccccttgtaaaatgaagattctttggcttacacccct 117  Q
    ||||| |||||||||||||||| ||||||||||| |||| |||||    
T  1995938 ggagattcccccttgtaaaatgtagattctttggtttacccccct 1995982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 105
Target Start/End: Complemental strand, 12862697 - 12862665
Alignment:
Q  73 ggagaatcccccttgtaaaatgaagattctttg 105  Q
    ||||| |||||||||||||||||||||||||||    
T  12862697 ggagattcccccttgtaaaatgaagattctttg 12862665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 24126198 - 24126254
Alignment:
Q  4 aagggttaatgggcttttacccccctgccatatggggctcttttggtatacccctat 60  Q
    |||| ||||| || ||||||||||||| ||||||||  | |||||||||||||||||    
T  24126198 aaggattaataggtttttacccccctgtcatatgggcgtattttggtatacccctat 24126254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 39661372 - 39661320
Alignment:
Q  5 agggttaatgggcttttacccccctgccatatggggctcttttggtatacccc 57  Q
    ||||||||| || ||||| ||||||||||| ||||| ||||||||| ||||||    
T  39661372 agggttaataggtttttaaccccctgccatttgggggtcttttggtttacccc 39661320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 105
Target Start/End: Original strand, 56083424 - 56083456
Alignment:
Q  73 ggagaatcccccttgtaaaatgaagattctttg 105  Q
    ||||| |||||||||||||||||||||||||||    
T  56083424 ggagattcccccttgtaaaatgaagattctttg 56083456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 23723 - 23670
Alignment:
Q  4 aagggttaatgggcttttacccccctgccatatggggctcttttggtatacccc 57  Q
    |||||||||| |||||||||||||||||||| || || | ||||||||||||||    
T  23723 aagggttaataggcttttacccccctgccatttgagggttttttggtatacccc 23670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 22457 - 22509
Alignment:
Q  5 agggttaatgggcttttacccccctgccatatggggctcttttggtatacccc 57  Q
    ||||||||| |||||||||||||| ||||| ||||| ||||||||| ||||||    
T  22457 agggttaataggcttttacccccccgccatttgggggtcttttggtttacccc 22509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 11309 - 11264
Alignment:
Q  5 agggttaatgggcttttacccccctgccatatggggctcttttggt 50  Q
    ||||||||| || ||||||||||||||||||||||| |||||||||    
T  11309 agggttaataggtttttacccccctgccatatgggggtcttttggt 11264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 55
Target Start/End: Original strand, 386 - 435
Alignment:
Q  6 gggttaatgggcttttacccccctgccatatggggctcttttggtatacc 55  Q
    |||||||| |||||||||||||||||||| |||||  |||||||| ||||    
T  386 gggttaataggcttttacccccctgccatttgggggacttttggtttacc 435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0471 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 10786 - 10842
Alignment:
Q  4 aagggttaatgggcttttacccccctgccatatggggctcttttggtatacccctat 60  Q
    |||| ||||| || ||||||||||||| ||||||||  | |||||||||||||||||    
T  10786 aaggattaataggtttttacccccctgtcatatgggcgtattttggtatacccctat 10842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0408 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 60
Target Start/End: Original strand, 10086 - 10139
Alignment:
Q  5 agggttaatgggcttttacccccctgccatatggggctcttttggtatacccctat 60  Q
    ||||||||| ||||||||  |||||||||| ||||| ||||||||| |||||||||    
T  10086 agggttaataggctttta--cccctgccatttgggggtcttttggtttacccctat 10139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University