View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9330_low_4 (Length: 872)

Name: NF9330_low_4
Description: NF9330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9330_low_4
NF9330_low_4
[»] chr1 (2 HSPs)
chr1 (20-856)||(46642756-46643580)
chr1 (825-856)||(46640464-46640495)


Alignment Details
Target: chr1 (Bit Score: 697; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 697; E-Value: 0
Query Start/End: Original strand, 20 - 856
Target Start/End: Complemental strand, 46643580 - 46642756
Alignment:
Q  20 tatatgacatgaccaagtaaacactacctctgaatttgaaagaacaaaaaagaaaagaataaaatattccaaggccaagctcttatctcatcagagataa 119  Q
    |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||      |||||||||||||||||||||    
T  46643580 tatatgacatgatcaagtaaacactccctctgaatttgaaagaacaaaaaagaaaagaataaaatgttccaag------ctcttatctcatcagagataa 46643487  T
Q  120 tggtggtaagctgccnnnnnnnnnnnnnnnnnnnntggacaagaaggtggtgttggcggtagagttacaaaagaacaaccaacaccagtacaatgaacag 219  Q
    |||||||||||||||                    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  46643486 tggtggtaagctgccggaggaggaggagg------tggacaagaaggtggtggtggcggtagagttacaaaagaacaaccaacaccagtacaatgaacag 46643393  T
Q  220 gatgttcataaaaagcatcacacccatgactcgatctttggaaatgcatatgaggaatacaattctttgtatcatccttatcatccaacttaacacaaat 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46643392 gatgttcataaaaagcatcacacccatgactcgatctttggaaatgcatatgaggaatacaattctttgtatcatccttatcatccaacttaacacaaat 46643293  T
Q  320 ctctgattcaccactaaagtaattatacgaatacgtcaaattctccaaccttggcaatctacatatactctcaggaataacaccagaaaatttattatgt 419  Q
    ||||||||||||||| | |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46643292 ctctgattcaccactcaggtaattatacgaatacgttaaattcttcaaccttggcaatctacatatactctcaggaataacaccagaaaatttattatgt 46643193  T
Q  420 gccacattcaactgctccaaacttttcattccactgatactttcaggcaattcaccaacaaactcattaaaactaacatcaaacactgtcactttatcca 519  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46643192 gccacattcaactgctccaaacttttcattccactgatactttcaggcaattcaccaacaaactcattaaaactaacatcaaacactgtcactttatcca 46643093  T
Q  520 attttcctatatcattaggtaaacagcctttcattttgctgttcgtcataattatctcattgattgtatccttcatattcgctacactcgatggaataca 619  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  46643092 attttcctatatcattaggtaaacagcctttcattctgctgttcgtcataattatctcgttgattgtatctttcatattcgctacactcgatggaataca 46642993  T
Q  620 accttgtatatcattgttcgcgaacacaacaacagaagctggcatctttccgaaattttctggtaaagaaaatttgaatttgttgttgttgatgaaaagt 719  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46642992 accttgtatatcattgttcgcgaacacaacaacagaagctggcatctttccgaaattttctggtaaagaaaatttgaatttgttgttgttgatgaaaagt 46642893  T
Q  720 gcatcaagtttgagatcaaagaggcctttaggaacatttccttgaaaattgttgtatcttatgtctaagtattttaatgaaggaatgcaaagaacaacct 819  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  46642892 gcatcaagtttgagatcaaagaggcctttaggaacatttccttgaaaattgttgtatcttatgtccaagtattttaatgaaggaatgcaaagaacaacct 46642793  T
Q  820 ccggaaatgttcctgagaattggttgttactgatgtc 856  Q
    |||| ||||||||||||||||||||||||||||||||    
T  46642792 ccgggaatgttcctgagaattggttgttactgatgtc 46642756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 825 - 856
Target Start/End: Complemental strand, 46640495 - 46640464
Alignment:
Q  825 aatgttcctgagaattggttgttactgatgtc 856  Q
    ||||||||||||||||||||||||||||||||    
T  46640495 aatgttcctgagaattggttgttactgatgtc 46640464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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