View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9330_low_43 (Length: 273)
Name: NF9330_low_43
Description: NF9330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9330_low_43 |
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Alignment Details
Target: chr7 (Bit Score: 180; Significance: 3e-97; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 18 - 267
Target Start/End: Complemental strand, 29928869 - 29928621
Alignment:
| Q |
18 |
attacgaggggcagcaccaatatatgtatctagaaaatcgttgctgatatttaaatctcctaattgtgtcacgtgagaagtaattgttctatcccgaacc |
117 |
Q |
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| T |
29928869 |
attaagaggggcagaaccaatatatgtatctagaaaatcgttactgatatttaaatctcctaattgtgtcacgtgagaagtaattgttctatcccgaacc |
29928770 |
T |
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| Q |
118 |
tgtacatcactcattaaattttaatattgagtcaacattagatccacatatgtttataattaagagaaaagtttgnnnnnnntagatcacttacagtaac |
217 |
Q |
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| T |
29928769 |
tgtacatcactcacaaaaatttaatattgagtcaacattagatacacatatgtttataattaagagaaaattatg-aaaaaatagatcacttacagtaac |
29928671 |
T |
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| Q |
218 |
atattgttgttgcaaagtttcattcgtgctatcatttttgtctctgctcc |
267 |
Q |
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| T |
29928670 |
atattgttgttgcaaagtttcattcgtgctctcatttttgtcgctgctcc |
29928621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 23 - 97
Target Start/End: Complemental strand, 28259974 - 28259900
Alignment:
| Q |
23 |
gaggggcagcaccaatatatgtatctagaaaatcgttgctgatatttaaatctcctaattgtgtcacgtgagaag |
97 |
Q |
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| T |
28259974 |
gaggggcagcactaatatatgtaactagaaaatcgttgctgatatttaaatctcctaattgtgtcacgtgagaag |
28259900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 200 - 266
Target Start/End: Complemental strand, 28259425 - 28259359
Alignment:
| Q |
200 |
tagatcacttacagtaacatattgttgttgcaaagtttcattcgtgctatcatttttgtctctgctc |
266 |
Q |
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| T |
28259425 |
tagatcacttacggtaaaatattgctgttgcaaagtttcatatgtcctatcatttttgtcactgctc |
28259359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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